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12 protocols using vectamount aq aqueous mounting medium

1

Fetal Liver Histopathology and Lipid Analysis

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Fetal liver tissue samples from the left lobe were fixed in 10% formalin for 24 h followed by storage in 70% EtOH. Histology was performed by the OUHSC Stephenson Cancer Tissue Pathology Core. In brief, samples were paraffin-embedded and sectioned for H&E and picrosirius red staining. Fresh-frozen liver from the left lobe was fixed in OCT compound, sectioned, and fixed with formalin for 5 min and washed with PBS. LipidSpot lipid droplet stain (Biotium, Fremont, CA) was added to the sections and incubated for 20 min. Sections were washed with PBS, counterstained with DAPI, and mounted using VectaMount AQ aqueous mounting medium (Vector Labs, Burlingame, CA). Slides were visualized using a Cytation 5 microscope and Gen5 imaging software (Agilent, Santa Clara, CA).
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2

Immunohistochemical Analysis of Immune Cells

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Tissue sections were deparaffinized in xylene and rehydrated with decreasing concentrations of alcohol. Subsequently, endogenous peroxide was blocked with hydrogen peroxide, and antigen retrieval was achieved by treating sections with 0.01 m sodium citrate, pH 6.0 for 1 min in a pressure cooker. After blocking with universal blocking solution (ZYMED Laboratories, San Francisco, CA, USA), tissue sections were stained with the designated primary antibodies. A Vectastain Elite ABC Peroxidase kit or Universal ImmPRESS kit (Vector Laboratories, Burlingame, CA, USA) were used for secondary antibodies, and visualization was performed using 3-amino-9-ethylcarbazole as a substrate (ZYMED Laboratories, San Francisco, CA, USA). Sections were then stained with hematoxylin for counterstaining and mounted using VectaMount AQ Aqueous Mounting Medium (Cat-No. H-5501; Vector Laboratories). Myeloperoxidase-positive (Abcam), F4/80-positive (Santa Cruz, 377009), and LY6C-positive cells (Abcam, ab15627) were counted in stained sections in six randomly chosen fields (×200), and bars are indicated standard errors of the means.
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3

Oil-Red-O Staining of Frozen Sections

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Oil-Red-O solution was prepared by dissolving 0.5 g Oil-Red-O (Poly Scientific) in 100 ml isopropanol. Frozen sections were cut to 5 μm and natively stained in Oil-Red-O solution for 20 minutes at room temperature, then rinsed in running tap water for 2 min. Hematoxylin counter-staining was performed without differentiation in HCl-ethanol and sections were rinsed with water, then mounted with VectaMount AQ Aqueous Mounting medium (Vector Labs).
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4

Immunohistochemical Analysis of Placental Ki67

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Immunohistochemical staining was performed on 5 μm paraffin-embedded sections of 4% paraformaldehyde-fixed mouse placentas. Ki67 staining was performed using a rabbit polyclonal antibody (1:1500, NB110–89717, Novus Biologicals, Centennial, CO). Antibody binding was detected using the Vectastain ABC Elite kit (Vector Laboratories, Burlingham, CA). Slides were counterstained with hematoxylin and mounted with VectaMount AQ Aqueous Mounting Medium (Vector).
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5

Fetal Liver Histopathology and Lipid Analysis

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Fetal liver tissue samples from the left lobe were fixed in 10% formalin for 24 h followed by storage in 70% EtOH. Histology was performed by the OUHSC Stephenson Cancer Tissue Pathology Core. In brief, samples were paraffin-embedded and sectioned for H&E and picrosirius red staining. Fresh-frozen liver from the left lobe was fixed in OCT compound, sectioned, and fixed with formalin for 5 min and washed with PBS. LipidSpot lipid droplet stain (Biotium, Fremont, CA) was added to the sections and incubated for 20 min. Sections were washed with PBS, counterstained with DAPI, and mounted using VectaMount AQ aqueous mounting medium (Vector Labs, Burlingame, CA). Slides were visualized using a Cytation 5 microscope and Gen5 imaging software (Agilent, Santa Clara, CA).
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6

Routine Histological Analysis of Liver

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Routine H&E staining of liver frozen sections was performed as described previously (32 (link)). Briefly, the sections were fixed with formalin overnight at room temperature and stained with Harris modified hematoxylin/Eosin-Phloxine solution (Newcomer Supply, #1201 and #1082A). The lipid content of liver specimens was analyzed by staining with Oil Red O, and the nuclei were counterstained with hematoxylin. Slides were mounted with VectaMount™ AQ aqueous mounting medium (Vector Laboratories, H-5501) and imaged using upright Olympus microscope with 4x and 20x objectives.
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7

Multiplexed IHC Profiling of NSCLC

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NSCLC tissue microarray sections were obtained from the Biobank of Central Finland. We designed a panel of 10 markers to a) quantify PD-L1 expression (E1L3N), and b) identify macrophages (CD68, KP1), T cells (CD3, LN10), granulocytes (CD66b, G10F5) and tumor cells (Pan-cytokeratin, BS5 & AKR1B10). T cells were further characterized to CD8+ and CD4+ cells with the respective markers (clones 4B11 and EP204, respectively), and macrophages to M1 and M2 polarization states with CD86 (E2G8P) and CD206 (E2L9N), respectively. The multiplex staining was conducted with Bond-III automated IHC stainer (Leica Biosystems) and Bond Refine Detection kit (DS9800, Leica Biosystems). ImmPACT AMEC Red (SK-4285, Vector Laboratories) was used as the chromogen, except for AKR1B10 which was stained with DAB on the final round. AKR1B10 was used instead of NQO1 based on antibody validation for Bond-III, where AKR1B10 outperformed NQO1. The slides were mounted with VectaMount AQ Aqueous Mounting Medium (H-5501, Vector Laboratories), scanned with NanoZoomer XR (Hamamatsu) with a 20x objective. De-staining was conducted with ethanol and heating was applied between all cycles to remove prior antibodies.
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8

Oil-Red-O Staining of Frozen Sections

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Oil-Red-O solution was prepared by dissolving 0.5 g Oil-Red-O (Poly Scientific) in 100 ml isopropanol. Frozen sections were cut to 5 μm and natively stained in Oil-Red-O solution for 20 minutes at room temperature, then rinsed in running tap water for 2 min. Hematoxylin counter-staining was performed without differentiation in HCl-ethanol and sections were rinsed with water, then mounted with VectaMount AQ Aqueous Mounting medium (Vector Labs).
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9

Immunofluorescence Staining of Senescent Hepatocytes

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Hepatocytes were cultured in glass bottom dishes (Cellvis-D35-14-0-N, Mountain View, CA, USA) and treated with senescence inducers for 24 h. Cells were fixed with 4% paraformaldehyde for 15 min followed by permeabilization with 0.2% Triton X-100 for 15 min at room temperature. Antigens were blocked with 2% normal goat serum and 1% bovine serum albumin (BSA) for 1 h in a humidified chamber at room temperature to prevent non-specific binding of the antibodies. Then, cells were incubated with primary antibodies (table S3) diluted in Antibody Diluent (Thermo Fisher Scientific-003218, Waltham, MA, USA) overnight (16 h) in a humidified chamber at 4 °C. Next day, the primary antibodies were washed off and the samples were incubated with fluorescently labeled secondary antibodies (table S4). Then the DNA was stained with DAPI (Sigma-Aldrich-D9542, St. Louis, MO, United States) and the F-actin was stained with Phalloidin-iFluor 488 (Abcam- ab176753, Cambridge, United Kingdom). Samples were mounted with VectaMount® AQ Aqueous Mounting Medium (Vector laboratories- H-5501-60, Newark, CA, USA) and imaged with Axio Observer 7 (Carl Zeiss Microscope). Fluorescence intensity or the number of nuclei was measured with Image J software.
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10

Immunohistochemical Detection of Deiminated Proteins

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Deiminated proteins were detected by using an anti-citrulline detection kit (17–347B-1, Millipore). Briefly, paraffin-embedded tissue sections were deparaffinized, rehydrated, and incubated in modification medium (0.0125% FeCl3, 0.125 M H2SO4, 0.1 M H3PO4, 0.25% 2,3-butanedione monoxime, 0.125% antipyrine and 0.25 M acetic acid) at 37 °C for 3 hours. Sections were subsequently blocked in 5% nonfat dry milk in PBS for 1 hour at room temperature, incubated with human anti-modified citrulline antibody (1 ug/ml) for 1 hour at 37°C, and incubated with HRP-conjugated goat anti-human antibody (1:500) for 1 hour at room temperature. Sections were then incubated with ImmPACT™ AMEC Red Peroxidase Substrate (SK-4285, Vector Laboratory, Burlingame, CA) for 30 minutes at room temperature and mounted with VectaMount® AQ Aqueous Mounting Medium (H-5501, Vector Laboratory, Burlingame, CA).
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