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27 protocols using anti cd11b pe cy7

1

Flow Cytometry Analysis of Tumor Immune Cells

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After being harvested and weighed, tumor tissues were cut into small pieces and mixed with IV collagenase for 2 h. Tissues were homogenized and filtered through a 70 μm filter to remove remaining undigested tissue. The single cell suspension was centrifuged at 500 g for 5 min, incubated with 2 μl extracellular antibody for 30 min, and then fixed with 4% paraformaldehyde for 20 min. Finally, the suspension was incubated with intracellular antibody for another 30 min before being tested by flow cytometry (NovoCyte, ACEA Biosciences, San Diego, USA). APC-Anti-CD4 (#553051), PE-Cy7-anti-CD25(#552880), PE-anti-FOXP3(#563101), PE-Cy7-anti-CD11b (#552850) and FITC-anti-Gr-1(#553126) were purchased from BD pharmingen™.
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2

Flow Cytometry Analysis of Ascites Cell Populations

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ASC or cells from tumor or ascites were resuspended in PBS supplemented with 2% FBS (106 cells/100 μL/staining reaction). 1 μg of each antibody was added to the cell suspension and incubated at 4°C for 30 minutes. Labeled cell populations were then analyzed by Gallios flow cytometer (Beckman Coulter) LSRII (BD Bioscience) with Kaluza or FLowJo software. Sample acquisition was accompanied with use of control unstained, single-color stained, and isotype controls to determine the appropriate voltages, compensations, and positioning of gates for data acquisition. Ascites cells were pre-gated to exclude debris, cell clumps, contaminating polymorphonuclear cells, red blood cells, and dead cells based on DAPI staining. Cell compositions were analyzed based on Texas Red (Texas Red channel) and the following IgG clones: APC-anti-CD34 (RAM34), PE-Cy7-anti-CD31 (MEC 13.3), APC-Cy7-CD45 (30-F11), or Texas Red, PE-Cy7-anti-CD11B, and APC-F4/80, and the corresponding isotype controls (BD Biosciences). Isotypes and the positions of previously characterized hematopoietic and endothelial populations on the plots [18 (link),19 (link)] were used to set gate cutoffs.
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3

Multiparametric Flow Cytometry Analysis

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Spleen, blood, bone marrow (BM) and BAL cells were harvested and single cell suspensions were created by passing the cells through 70 μm pore sized cell strainers (BD Falcon, Durham, NC). Erythrocytes were then lysed using ammonium chloride lysis buffer and washed two times using phosphate-buffered saline (PBS) without calcium, phenol red, or magnesium. Cells were stained with the following antibodies for flow cytometric studies: PE Cy7 anti-CD11b, APC anti-Gr-1, and Pacific Blue anti-Ly6G (BD Pharmingen, Billerica, MA). Additional antibodies used were anti-lineage mixture (Lin; BD Biosciences, San Jose, CA), anti-ckit, anti-Sca-1, anti-CD135, anti-CD150 (eBioscience, San Diego, CA). Sytox Blue (Invitrogen, Carlsbad, CA) was used for cell viability analysis and samples were acquired and analyzed using an LSRII flow cytometer (BD Biosciences) and FACSDiva (BD Biosciences)(37 (link), 38 (link)).
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4

Immunophenotyping of Lung Cells

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Isolated cells in the lung were stained with indicated antibodies for further analysis. For immunostaining, the cells were washed two times with PBS containing 2% FBS, adjusted to approximately 1 × 105 to 1 × 106 cells in 100 μL of the same buffer, and labeled with PE-anti-F4/80 (BD Bioscience, 565410), PE-Cy7-anti-CD11b (BD Bioscience, 561098), and FITC-anti-TNF-α (BD Bioscience, 554418). Incubations with antibodies were performed for 30 min at 4 °C in the dark, and then cells were centrifuged for 4 min at 900 rpm. After removal of the supernatant, the cell pellet was washed once with PBS containing 2% FBS and then resuspended in fixation and permeabilization buffer (BD Bioscience, Franklin Lakes, NJ, USA) for 30 min at 4 °C. Cells were washed two times with PBS containing 2% FBS and then acquired by FACSVerse (BD Bioscience) and analyzed using software Flow Jo (Tree Star, Inc., Ashland, OR, USA).
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5

Bronchoalveolar Lavage and Flow Cytometry

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The trachea was cannulated and lavaged four times with 800 μl cold PBS containing 2 mM EDTA. The BAL cells were counted using a hematocytometer (Hausser Scientific, Horsham, PA). BAL single cell suspensions were created by passing the cells through 70 μm pore sized cell strainers (BD Falcon, Durham, NC). Cells were stained with the following antibodies for flow cytometric studies: PE Cy7 anti-CD11b, APC anti-siglec, and Pacific Blue anti-Ly6G, FITC anti CD11c, and PE anti-F4/80 (BD Pharmingen, Billerica, MA). Sytox Blue (Invitrogen, Carlsbad, CA) was used for cell viability analysis and samples were acquired and analyzed using an LSRII flow cytometer (BD Biosciences) and FACSDiva™.
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6

Characterization of Splenic Immune Cells

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Spleens were harvested from naive mice and septic mice at days 7 and 14. Single-cell suspensions were created by passing cells through 70-μm pore-sized cell strainers (BD Falcon, Durham, NC). Erythrocytes were then lysed using ammonium chloride lysis buffer and washed twice using phosphate-buffered saline. Cells were stained with the following antibodies for flow cytometric studies: PE Cy7 anti-CD11b, PB anti-Ly6C, APC Cy7 anti-Ly6G, PerCpCy5.5 anti-MHCII, FITC anti-F4/80, and APC anti-CD11c (BD Pharmigen, Billerica, MA). Sytox Blue (Invitrogen, Carlsbad, CA) was used for cell viability analysis, and samples were acquired and analyzed using a LSRII flow cytometer (BD Biosciences) and FACSDiva (BD Biosciences, San Jose, CA).
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7

Single-Cell Isolation and Characterization

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Isolated single cells were resuspended in flow cytometry buffer (2% BSA, 10μM HEPES in HBSS without calcium/magnesium) at approximately 107 cells/mL and processed at 4 °C. Cells were blocked with mouse IgG isotype control (ThermoFisher) and rat IgG isotype control (R&D Systems) as appropriate. Cells were then incubated with the appropriate conjugated primary antibodies (FITC-anti-CD45, BD Pharmigen 555482; PE-Cy7-anti-CD11b, BD Pharmigen 557743; PE-anti-CD3, Biolegend 300308; APC-Cy7-anti-CD31, Biolegend 303120) for 1 h. Next, cells were stained using the LIVE/DEAD Fixable Dead Cell Stain Kit (Invitrogen) according to the manufacturer’s instructions. Immediately before analysis and sorting, DAPI was added to the flow cytometry buffer. Cells were sorted and analyzed on a BD FACSAria II or FACSAria Fusion. Cells were identified and gated for size, singularity, cell viability, and all surface-marker expression was gated with appropriate full-minus-one controls. Cells were sorted into cold catching medium and a fraction was removed for cell purity analysis. Isolated cells were lysed in TRIzol (Invitrogen), and stored at − 80 °C until further processing.
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8

Phenotypic Characterization of Murine Splenocytes

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Mice were immunized i.p. with 25 μg/animal of CpG ODN 1826 (InvivoGen) or with 5 μg/animal of Salmonella flagellin (FliC). 6 h after immunization, mice were euthanized and splenocytes were labeled. Fc receptors were blocked with Fc Block (BD Biosciences) and subsequently stained first with anti-CD19-Biotin (clone 1D3), anti-CD3-Biotin (clone 145.2C11), and anti-CD49b-Biotin (clone DX5) for 40 min on ice. After two washes with PBS-2% FBS, cells were then incubated anti-MHCII (I-A/I-E)-Alexa Fluor 700 (clone M5/114.15.2), anti-CD11c-BV421 (clone N418), anti-CD11b-PE.Cy7 (clone M1/70), anti-CD8α-BV786 (clone 52–67), anti-CD80-FITC (clone 16-10A1), anti-CD86-APC (clone GL1), anti-CD40-PE (clone 1C10), Streptavidin APC.Cy7 (all antibodies and the streptavidin were purchased from BD Biosciences) and Live and Dead Aqua (Life Technologies). Flow cytometry was performed using LSRFortessa (BD Biosciences) and results were analyzed in FlowJo software (version 9.3, Tree Star, San Carlo, CA, USA).
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9

Near-infrared Imaging of Atherosclerotic Plaque

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In order to investigate targeting ability of the antibody in tissue condition, we first performed near-infrared fluorescent imaging on excised aortas. Briefly, anti-CD11b-PE-Cy7 (BD Bioscience) was injected to 5 ApoE−/− and 5 C57 mice via tail vein (1 mg/kg), while IgG-PE-Cy7 (BD Bioscience) with same dose was injected to another 5 ApoE−/− mice. Twenty four hours later, mice were sacrificed. NaCl (0.9%, 5 mL) and paraformaldehyde (4%, 5 mL) were sequentially injected into vascular system to eject blood and fix vessels. Then, aorta was carefully dissected, placed on a microscope slide, covered with gauze (rinsed with 0.01 M PBS), and imaged within 1 h in the Carestream FX PRO (Kodak, USA). The Cy7 label was excited using a wavelength filter of 615–665 nm, while the emission was recorded using a 695–770 nm filter. Fluorescent images were acquired with identical exposure time for all aortas. Area percentage of plaque was measured and total photon count was recorded around plaque areas. Mean signal intensity was calculated by dividing the total photon count to the total area of plaques (SI-mean). Likewise, noise intensity (NI-mean) was measured by drawing a ROI in normal area of the aorta. Finally, a signal-to-noise ratio (SNR) was calculated as: SI-mean/NI-mean.
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10

Quantifying Innate Immune Cells in Neonates

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Single cell suspensions were stained with anti-Ly6G APC (Becton-Dickinson (BD) (Franklin Lakes, NJ), anti-CD11b-PECy7 (BD, Franklin Lakes, NJ), and anti-F4/80-APC (Ebioscience, San Diego, CA). Sytox Blue (Invitrogen, Carlsbad, CA) was used for cell viability analysis. Samples were acquired and analyzed on an LSR II flow cytometer (BD) and analyzed via FACSDiva (BD) software. At least 1 × 104 live cells (Sytox Blue; Invitrogen, Carlsbad, CA) were collected for analysis. The absolute numbers of innate immune effector cells were determined by multiplying the percentage of neutrophils (CD11b+, Ly6G+) and macrophages)(CD11b+, Ly6G, F4/80+) within the total sample population by the total sample cell number. In neonates, these were divided by the total number of mice in the pooled sample. Absolute numbers represent total macrophages or neutrophils per mouse.
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