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8 protocols using uo126

1

TGF-β1-Induced Epithelial-Mesenchymal Transition

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Dulbecco's modified Eagle's medium (DMEM), RPMI1640 and the antibiotics were purchased from Life Technologies (Rockville, MD, USA). Fetal bovine serum (FBS) was purchased from Hyclone (Logan, UT, USA). Twenty four-well invasion chambers (8 μm pore) were obtained from Becton-Dickinson (San Diego, CA). ZER was a generous gift from Dr. Murakami Akira (Kyoto University, Japan). LY2109761 was purchased from Selleck Chemicals (Houston, TX, USA). UO126 (a MEK1/2 inhibitor) were purchased from Tocris (Ellisville, MO, USA). SIS3 (a smad3 inhibitor) was purchased from Calbiochem (San Diego, CA, USA). The secondary horseradish peroxidase (HRP)-conjugated and mouse monoclonal anti-β-actin antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA, USA). Mouse monoclonal anti-human Ki-67 antigen was purchased from Dako (Cambridgeshire, UK). Rabbit monoclonal anti-FN and smad3 (total and phospho-form) antibodies were purchased from Epitomics (Burlingame, CA, USA). Rabbit polyclonal ERK1/2 (total and phospho-form) antibodies were purchased from Cell Signaling Technology (Beverly, MA, USA). Recombinant Human TGF-β1 was purchased from R&D Systems (Minneapolis, MN, USA). The ECL prime reagents were from Amersham (Buckinghamshire, UK).
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2

Phagocytic Activity of NR8383 Cells

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NR8383 cells were first treated with one of the following: CX3CL1 protein (R&D Systems, Minneapolis, MN, USA), anti-CX3CR1 antibody (R&D Systems, Minneapolis, MN, USA), MFG-E8 protein (R&D Systems, Minneapolis, MN, USA), Bay11–7082 (InvivoGen, San Diego, CA, USA) or UO126 (Tocris Bioscience, Bristol, UK). Thereafter, NR8383 cells were washed with 5% PBS solution twice. Subsequently, the NR8383 cells were incubated with PKH−26 (Sigma-Aldrich, St. Louis, MO, USA) labeled Ida-ATRA-NB4 cells (2 × 106) for 30 min before determining the amount of phagocytosis using a BD FACScan [24 (link)]. A subset of the Ida-ATRA-NB4 cells was treated with anti-CX3CL1 (R&D Systems, Minneapolis, MN, USA) before labeling with PKH−26. The results were expressed either as the percentage (%) of NR8383 cells with phagocytic activity in engulfing apoptotic cells or as a phagocytosis index that indicates a fold increase relative to the phagocytic activity of untreated NR8383 cells.
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3

Peptide-based Signaling Pathways Investigation

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Exendin-4 and 1,4-diamino-2,3-dicyano-1,4-bis[2-aminophenylt hio]butadiene (UO126) were purchased from Tocris (Bristol, UK). PACAP-38, glucagon,1 (link)–29 (link) secretin, GIP and PTH1 (link)–34 were purchased from AnaSpec (Fremont, CA, USA). Urocortin was purchased from Sigma (St Louis, MO, USA). Drug stocks were prepared in accordance with the manufacturer’s instructions, either in assay buffer or dimethysulphoxide (DMSO). Final concentrations of DMSO in cell culture experiments did not exceed 0.1%, and a 0.1% DMSO vehicle control was used whenever appropriate.
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4

Signaling Pathway Inhibition in Fish

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Control fish were treated with DMSO (1:200). Mapk/Erk inhibitor, UO126 (Tocris Bioscience); PI3K/Akt inhibitor, LY294002 (Cayman Chemical); FGF receptor inhibitor, SU5402 (Pfizer); PLCγ inhibitor, U73122 (Sigma); and Jak/Stat3 inhibitor, cucurbitacin I (EMD Millipore) were used in this study. Fish were immersed in fish water containing the inhibitor (10 μM) or received 1 μl intravitreally of a 10 μM stock as previously described (Wan, 2012 (link); Wan et al., 2014 (link); Zhao et al., 2014 (link)).
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5

Th17 Cell Differentiation with ERK Inhibitor

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CD4+T cells were activated with anti-CD3/CD28 beads (1:5 bead:cell ratio) and cultured in X-VIVO supplemented with 4ng/mL IL-1β, 20ng/mL IL-6, 5ng/mL IL-23, 5ng/mL TGF-β 10μg/mL anti-IL-4 and 10μg/ml anti-IFN-γ (all from R&D Systems) for 72h. For Th17 differentiation in the presence of ERK inhibitor, CD4+T cells were activated in the presence or absence of 0.1μg/mL ERK inhibitor (UO126, Tocris Bioscience) (where the inhibitor or DMSO carrier was resupplemented after 36h). Cytokines were analysed at the end of culture by CBA (BD).
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6

Inhibitor-Mediated Modulation of Signaling Pathways

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Control fish were treated with DMSO (1:200). Mapk/Erk inhibitor, UO126 (Tocris Bioscience); PI3K/Akt inhibitor, Ly294002 (Cayman Chemical) and PI-103 (Tocris); EGF receptor inhibitor, PD153035; β-catenin inhibitor, pyrvinium (Sigma); and Jak/Stat inhibitor JSI-124 (Tocris) were used in this study. Fish were immersed in fish water containing the inhibitor (10 µM) or injected intravitreally through the front of the eye (1 µl of 1 µM).
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7

Quantifying Kv4.2 Channel Internalization

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The transfected neurons were preincubated with the nicotinic receptor antagonist tubocurarine (Sigma, T2379, 2 μM) for 20 min at RT to block binding of BTX to the endogenous nicotinic receptors. The neurons were then incubated with 2 μg/ml Rh-BTX for 30 min at 17°C to label BBS-Kv4.2. Cells were incubated with vehicle, UO126 (Tocris, 1144), SB203580 (Tocris, 1202), or both inhibitors at 17°C for 5 min before incubating at 37°C for 15 min to allow internalization of the channel. Cells were then fixed, permeabilized, and incubated with mouse anti-Myc antibody at RT for 2 h to label total Kv4.2. After washing, cells were incubated with anti-mouse-488 secondary antibody at RT for 1 h. Cells were then mounted on slides with anti-fade mounting medium containing DAPI and imaged using a Zeiss 710 laser scanning confocal microscope equipped with a 63x objective. Confocal images were collected using ZEN analysis software and analyzed with ImageJ (NIH) analysis software.
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8

Vitamin D Signaling Pathway Modulation

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1a,25-dihydroxyvitamin D 3 was from Sigma Chemical Co. (St. Louis, MO, USA). Fetal bovine serum (FBS) was from Natocor (Villa Carlos Paz, Argentina). Free-phenol red Dulbecco's modified Eagle's medium (DMEM) was from US Biological Inc. (Massachusetts, MA, U.S.A). Anti-CDK4, anti-CDK6 and anti-tubulin antibodies were from Cell Signaling Technology Inc. (Beverly, MA, USA). Anti-VDR, anti-P-p38 MAPK, anti-p38 MAPK and anti-P-ERK1/2 antibodies and antimouse and anti-rabbit horseradish peroxidaseeconjugated secondary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). The Super Signal CL-HRP substrate system for enhanced chemiluminiscence (ECL) was from General Electric (Oklahoma, USA). The C2C12 wild type (WT) cell line was obtained from ATCC (American Type Culture Collection, Manassas, VA). SB203580 and UO126 are from TOCRIS Bioscience (Bristol, United Kingdom). Puromycin was from Invitrogen (Invivogen, San Diego, CA). Lentivirus particles containing a pLKO.1 vector with the information to express a shRNA against VDR were provided by Dr. V. Gonzalez Pardo, Universidad Nacional del Sur.
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