The largest database of trusted experimental protocols

25 protocols using coulter epics xl mcl

1

hUCB-MSCs Immunophenotyping Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The MSCs were treated with 0.25% trypsin, washed once with PBS, and collected. The following fluorescently labeled antibodies were used for flow cytometric characterization of hUCB-MSCs: anti-CD29 (Molecular Probes, Eugene, OR), anti-CD73 (BD Pharmingen, San Diego, CA), and anti-CD90 (Abcam, Cambridge, MA). Detached cells were washed twice with Dulbecco's PBS, centrifuged, washed in ice-cold Dulbecco's PBS supplemented with 1% bovine serum albumin (FCM buffer), and fixed in 2% paraformaldehyde in FCM buffer. Cells were then incubated with antibodies conjugated to fluorescein isothiocyanate (FITC) or phycoerythrin (PE) (Pharmingen, BD Biosciences Europe, Heidelberg, Germany) for 15 minutes on ice in a dark room at concentrations recommended by the manufacturer. We used anti-IgG-FITC (33814X; Pharmingen, BD Biosciences Europe) and anti-IgG-PE (33815X; Pharmingen, BD Biosciences Europe) as isotypic controls. After being washed, cells were analyzed on a Coulter EPICS XL-MCL flow cytometer (Beckman Coulter, Krefeld, Germany) by using EXPO-32 software. Instrument settings for scatter conditions and background fluorescence were adjusted for untreated cells.
+ Open protocol
+ Expand
2

Phenotypic Characterization of PDLSCs

Check if the same lab product or an alternative is used in the 5 most similar protocols
In order to identify the phenotype of PDLSCs, the cells were treated with surface markers and analyzed using flow cytometry. Briefly, the third-passage cells from each group were harvested by trypsin and washed using PBS (containing 1% bovine serum albumin). Cells were incubated in the dark at 4°C for 30 min with FITC-conjugated antibodies against STRO-1 (BioLegend, San Diego, CA, USA), CD14 (eBioscience, San Diego, CA, USA), CD34 (eBioscience, San Diego, CA, USA), CD45 (eBioscience, San Diego, CA, USA), CD73 (eBioscience, San Diego, CA, USA), CD105 (eBioscience, San Diego, CA, USA), and HLA-DR (eBioscience, San Diego, CA, USA) and PE-conjugated antibodies against CD19 (eBioscience, San Diego, CA, USA), CD90 (eBioscience, San Diego, CA, USA), and CD146 (eBioscience, San Diego, CA, USA). Cells were then washed and suspended for further characterization using flow cytometry (Coulter EPICS XL-MCL, Beckman Coulter, Fullerton, CA, USA). The isotype-matched normal IgG antibodies were used as controls.
+ Open protocol
+ Expand
3

Cell cycle analysis by flow cytometry

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were counted manually using a hemocytometer. Cell viability and cell cycle progression were analyzed by flow cytometry to determine the DNA content of cell nuclei stained with propidium iodide (PI) after the exclusion of necrotic cells by forward light scatter (FSC). Briefly, cells were collected by centrifuge and washed in PBS (phosphate-buffered saline). DNA was stained by incubating the cells in PBS containing 50 µg/mL PI for 30 min at 4 °C. This allows direct DNA staining in PI hypotonic solution without the requirement of RNase treatment as the RNA is removed by hypotonic shock [18 (link)]. Fluorescence was measured and analyzed by flow cytometry using Coulter Epics XL-MCL equipment (Beckman Coulter Inc., Brea, CA, USA) [23 (link)]. Apoptosis data were reported on a logarithmic scale (FL3). For cell cycle analyses, apoptotic cells were gated out and data were reported on a linear scale (FL2). Doublet discrimination was done with the Coulter Epics XL-MCLTM Flow Cytometer SYSTEM IITM Software, which can detect >90% cellular doublet in cells ≥7 μm, using peak vs. integral discrimination. A peak fluorescence signal was assigned to AUX to measure peak vs. integral fluorescence.
+ Open protocol
+ Expand
4

Flow Cytometric Data Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Flow cytometric analyses were performed using a Coulter EPICS XL-MCL (Beckman Coulter, Pasadena, CA), a BD LSR Fortessa (Becton Dickinson, Erembodegem, Belgium) or a BD FACSCanto II (Becton Dickinson). Collected data were exported to the FACSDiva 6.0 software (BD Biosciences) to select subpopulations according to their forward and scatter factors.
+ Open protocol
+ Expand
5

Cardiomyocyte Apoptosis Quantification

Check if the same lab product or an alternative is used in the 5 most similar protocols
According to the manufacturer’s instructions, cardiomyocyte apoptosis was determined by flow cytometry using the Annexin V-FITC Apoptosis Detection Kit (Beyotime, Shanghai, China). In brief, cardiomyocytes were stained with a mixed dye solution of Annexin V-FITC (an indicator of apoptosis) 5 μL (20 μg/L) and propidium iodide (PI) 10 μL (50 μg/L) at 4°C for 30 min incubation. Analysis by flow cytometry (COULTER EPICS XL-MCL; Beckman Coulter, Brea, CA, United States) was performed within 30 min (excitation and emission wavelengths of 485 and 525 nm, respectively).
+ Open protocol
+ Expand
6

Annexin V Apoptosis Assay

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were transfected with miRs, incubated for indicated times at 37 °C and 5% CO2. Cells were then collected and centrifuged at 200 g for 5 min. The supernatant was discarded and the pellet was washed with 1 × buffer. Cells were then resuspended in 90 μl of 1 × buffer and 10 μl of fluorescein isothiocyanate-conjugated annexin V (Molecular Probes, Grand Island, NY, USA), incubated in the dark and analyzed using a Coulter epics XL-MCL (Beckman-Coulter Inc., Brea, CA, USA).
+ Open protocol
+ Expand
7

Bone Marrow Aspiration and Cell Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Sternum fine-needle (18G) BM aspiration (3–5 ml) was performed by an expert haematologist in the surgical theatre, once the patient was under general anaesthesia and before the sternotomy. Fresh BM smears were used for direct cell count (only in COPD patients). A 50 μl BM sample was diluted 1:4 in 1× PBS (pH 7,4; PAA) and analyzed using CELL-DYN Sapphire (Abbot, USA) to determine cell types distribution. HSC and EPC were isolated from fresh BM aspirates using a RosetteSep Kit (STEMCELL Technologies Inc., Canada) following manufacturer’s instructions to obtain a more representative sample. Cells were quantified by flow cytometry on a FACScan (Coulter Epics XL-MCL; Beckmann Coulter) by the presence of antigens CD34 (BD Pharmingen, NJ, USA), KDR (R&D Systems, Minneapolis, USA), CD133 (Miltenyi Biotec, Germany), c-kit, Ki67 (Abcam, Cambridge, UK). Gates were set to detect CD34+ cells and to evaluate co-expressions of CD34+ cells with CD 133, KDR, c-kit and Ki67. At least 20.000 events were acquired for each sample. Following previous publications [2 (link)–4 ], EPCs were also identified by FACS as CD34+ CD133+ KDR+ cells. The remaining BM sample were centrifuged at 1800 rpm/5 min/4 °C to separate cells from plasma and the supernatant was stored (100 μl aliquots) at − 80 °C until cytokine analysis.
+ Open protocol
+ Expand
8

Melanoma Cell CD74 and PD-L1 Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
Melanoma cells (1 × 106) were allowed to grow in medium with or without IFN‐γ (100 IU/mL) or 4‐IPP for 48 hours. Cells were washed with ice‐cold PBS and detached by gentle pipetting, subsequently fixed with acetone. Cells were incubated with mouse monoclonal anti‐human CD74 Ab (LN2), rabbit anti‐human PD‐L1 Ab (E1L3N) or its isotype control Abs; normal mouse IgG1 (sc‐3877; Santa Cruz Biotechnology) and rabbit (DA1E) mAb IgG XP Isotype Control (Cell Signaling Technology) as primary Abs followed by FITC‐conjugated rabbit anti‐mouse immunoglobulins and swine anti‐rabbit immunoglobulins (Dako Japan) as secondary Abs. Ten thousand events per sample were collected with a Coulter Epics XL‐MCL flow cytometer (Beckman Coulter, Miami, FL, USA). Data analysis was performed using FlowJo FACS analysis software (Tree Star, Ashland, OR, USA).
+ Open protocol
+ Expand
9

Assessing Tendon Cell Viability via Cyclic Strain

Check if the same lab product or an alternative is used in the 5 most similar protocols
The viability of tendon cells after applied cyclic strain was assessed with propidium iodide staining, as previously described [16] (link). The strained and unstrained tendon cells were trypsinized and centrifuged along with their supernatant in individual tubes. The cell pellets were washed in PBS and fixed with ice cold 70% ethanol for 1 hour. Then the fixed cells were stained with propidium iodide staining solution [1 ml PBS (Ca+2, Mg+2 free, 0.1% glucose), 10 microliters Rnase A 100 mg/ml and 5 microliters propidium iodide 10 mg/ml] and incubated for minimum 30 minutes. The DNA content in suspended cells was analyzed using the FL3 channel on a flow cytometer, Coulter Epics XL- MCL (Beckman Coulter Inc, USA), and cell death was calculated based on cell populations in the sub G1 phase of the cell cycle.
+ Open protocol
+ Expand
10

Cell Cycle Analysis of CASE Treatment

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine the effect of CASE on cell cycle progression, LNCaP cells (1×106) were plated in 75 cm2 flasks and allowed to attach for 36 h. The media was replaced with fresh serum-complete medium containing CASE and cells were treated for 12 h. Cells were harvested by trypsinization, washed with phosphate buffered saline (PBS), and fixed with 70% methanol. Cells were then treated with RNase (500 μg/mL) and stained with propidium iodide (40 μg/mL) for 30 min at 37°C. The cells were analyzed by flow cytometry using a Coulter Epics XL-MCL (Beckman Coulter, USA).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!