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4 protocols using protease max solution

1

Protein Extraction and Digestion

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Lysis buffer (7M urea, 2M thiourea, 4% CHAPS, 70mM DTT and protease inhibitor cocktail), dithiothreitol (DTT), SDS, iodoacetamide, ammonium bicarbonate were obtained from Sigma (St Louis, MO). Sequencing-grade trypsin and protease MAX solution were purchased from Promega (Madison, WI). Protease inhibitors cocktails were purchased from Roche (Mannheim, Germany). Coomassie (Bradford) protein assay kit was obtained from Pierce (Rockford, IL). [Glu1]-fibrinopeptide B ([Glu1]-Fib) and Saccharomyces cerevisiae enolase digest were obtained from Waters (Milford, MA). All solutions were prepared using MS-grade water from J.T Baker (Center Valley, PA).
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2

Efficient Protein Digestion Protocol

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Proteins were digested by trypsin and LysC (Promega). trypsin hydrolyzes the ester bonds on the carboxyl side of Arg, while trypsin and LysC hydrolyze the ester bonds on the carboxyl side of Lys. The combination of trypsin and LysC enhances the efficiency of digestion. Therefore, trypsin/LysC digestion was carried out as described previously [27 (link)]. To the supernatant obtained from the above steps, 90 μL of 6 M urea was added and shaken for about 10 min at RT using a tube mixer. Then, 360 μL of 0.1 M Tris-HCl (pH 8.5) was added, and ultrasonic treatment and standing on ice were repeated twice for 30 s using an ultrasonic washer (Branson 2510, Danbury, CT, USA) to resuspend the protein precipitate. Next, 10 μL of 0.5 mg mL−1 LysC solution and 25 μL of 1% Protease Max solution (Promega, Nacka, Sweden) were added and mixed by tapping, and the samples were incubated at 25 °C for 3 h. Finally, 10 μL of 0.5 mg mL−1 trypsin solution was added and mixed by tapping, and the samples were incubated at 37 °C for 16 h.
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3

Mass Spectrometry Protein Identification

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Dithiolthreitol (DTT) and iodoacetamide were purchased from Bio-Rad (Hercules, CA). MS-grade water, acetonitrile and formic acid (99%) were obtained from EMD Chemicals (Gibbstown, NJ). Sequencing-grade trypsin, resuspension buffer and protease MAX solution were purchased from Promega (Madison, WI). [Glu1 (link)]-fibrinopeptide B ([Glu1 (link)]-Fib) and Saccharomyces cerevisiae enolase digest were obtained from Waters (Milford, MA). PBS solution was purchased from Fisher (Fair Lawn, NJ).
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4

Peptide Identification Mass Spectrometry

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Dithiolthreitol (DTT) and iodoacetamide were
purchased from Bio-Rad (Hercules, CA). MS-grade water, acetonitrile,
and formic acid (99%) were obtained from EMD Chemicals (Gibbstown,
NJ). Sequencing-grade trypsin, resuspension buffer, and protease MAX
solution were purchased from Promega (Madison, WI). [Glu1]-fibrinopeptide B ([Glu1]-Fib) and Saccharomyces
cerevisiae
enolase digest were obtained from Waters (Milford,
MA). PBS solution was purchased from Fisher (Fair Lawn, NJ).
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