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6 protocols using rg7388

1

Investigating HDAC and MDM2 inhibitors in cancer cells

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The histone deacetylase (HDAC) inhibitor SAHA was purchased from Selleckchem (Houston, TX, USA) and the MDM2 inhibitor RG7388 was purchased from MedChemExpress (Monmouth Junction, NJ, USA). The primary antibodies against p53, p21, p27, aurora kinase-B (AURK-B), cell division cycle 25C (CDC25C), cyclin dependent kinase 1 (CDK1), Bax, Bak, and cleaved poly (ADP-ribose) polymerase (PARP) (1:1000) were purchased from Cell Signaling Technology, (Danvers, MA, USA). MDM2 antibody (1:500 mouse monoclonal) was purchased from Santa Cruz Biotechnology, (Dallas, TX, USA). β-actin (1:2000) was purchased from Sigma Aldrich (St. Louis, MO, USA). The secondary antibodies anti-rabbit, anti-mouse, and horseradish-peroxidase (HRP) conjugated and dimethylsulfoxide (DMSO) were purchased from Sigma Aldrich. Nitrocellulose membrane (0.45 µm) was purchased from Amersham (GE Healthcare Life Sciences, Marlborough, MA, USA). ECL was purchased from KPL Biosolutions (Milford, MA, USA). DEVD-amc CellEventTM Caspase-3/7 Green ReadyProbeTM was purchased from Thermo Fisher (Molecular Probes, Life Technologies, Carlsbad, CA, USA). Other chemicals and reagents used in this experiment were of research grade.
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2

Diverse Antibody and Drug Assay Protocol

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Antibodies against p53 (48818; clone DO-7), p21 (2947; clone 12D1), pH2AX (Ser 139) (80312; clone D7T2V), pH2AX (Ser139/Tyr142) (5438; clone N/A), H2AX (7631; clone D17A3), pAURKA(Thr288)/B(Thr232)/C(Thr198) (2914; clone D13A11), AURKA (91590; clone D3V7T), AURKB (3094; clone N/A), pChk1 (Ser345) (2348; clone 133D3), pChk2 (Thr68) (2197; clone C13C1), Chk1 (2360; clone 2G1D5), Chk2 (6334; clone D9C6), vinculin (13901; clone E1E9V), GAPDH (5174S; clone D16H11), and HRP-conjugate secondary anti-rabbit (7074) were obtained from Cell Signaling Technology (CST) (Danvers, MA, USA). An antibody against MDM2 (MA1-24755) and qPCR primers for p21 (Hs00355782) and PUMA (Hs00248075) were obtained from ThermoFisher (Waltham, MA, USA). An antibody against pH2AX (Ser139) (ab81299) for immunohistochemistry was obtained from Abcam (Waltham, MA, USA). ImmPRESS Horse Anti-Rabbit (MP-7401), a secondary antibody for immunohistochemistry, was obtained from Vector Laboratories (Newark, CA, USA). Drugs were obtained from the following sources: TP-0903 tartrate (SPD Oncology, Cambridge, MA, USA), decitabine (LC-Labs, Woburn, MA, USA), and RG7388 (MedChemExpress, Monmouth Junction, NJ, USA).
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3

Cultivation of Lung Cancer and MEF Cells

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Human lung cancer cell lines (H1299, H460) were obtained from the American Tissue Collection Center (ATCC) and authenticated by short tandem repeat analysis at the Leibniz Institute DSMZ—German Collection of Microorganisms and Cell Cultures, Braunschweig, Germany. Cells were maintained in high‐glucose Dulbecco's modified Eagle's medium (DMEM) supplemented with 10% fetal bovine serum (FBS, Sigma‐Aldrich), 100 U/ml penicillin, 100 μg/ml streptomycin (Life Technologies), and 1 μg/ml amphotericin B (Sigma) at 37°C with 5% CO2. Primary MEFs were isolated from E12.5‐13.5 mouse embryos and amplified under low oxygen conditions (3% O2); their gender is not available. Eμ‐Myc lymphoma cell lines were maintained in B‐cell medium: 1:1 mixture of DMEM and Iscove's modified Dulbecco's medium (IMDM) supplemented with 20% FBS, 100 U/ml penicillin/streptomycin, 50 μM 2‐mercaptoethanol, and 1 ng/ml mIL‐7 (ImmunoTools). Cells were cultured on a feeder layer of 30 Gy‐irradiated NIH 3T3 cells. Nutlin‐3a (Sigma) was used at 10 μM, RG7112 (MedChemExpress) at 5 μM, RG7388 (MedChemExpress) at 8 μM, MI773 (Selleckchem) at 10 μM, and Mafosfamide (Santa Cruz) at 1–5 μg/ml as indicated. Hydrogen peroxide (Sigma) was used at 50–800 μM.
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4

Evaluating ALRN-6924, RG7112, and Paclitaxel Efficacy

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ALRN-6924 was kindly provided by Aileron Therapeutics Inc. (Watertown, MA, USA). RG7112 and RG7388 (idasanutlin) and paclitaxel were purchased for in vitro studies from MedChemExpress (Monmouth Junction, NJ, USA). For in vivo paclitaxel efficacy studies, the agent was obtained from MD Anderson Cancer Center pharmacy. This source of paclitaxel was later changed to the National Cancer Institute for pharmacodynamic experiments. paclitaxel was prepared in 15% ethanol, 15% kolliphor (Sigma-Aldrich Co., LLC, St Louis, MO, USA), and water for in vivo studies. Eribulin was obtained from the MD Anderson Cancer Center pharmacy. Dimethyl sulfoxide (DMSO) was obtained from Sigma-Aldrich (Sigma-Aldrich Co., LLC, St Louis, MO, USA). All drugs used for in vitro studies were initially prepared in DMSO prior to dilution in a tissue culture medium.
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5

Evaluation of AML Cell Lines and Compounds

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Human AML cell lines, including MV-4-11, MOLM-13, and HL-60, were purchased from American Type Culture Collection (ATCC; Manassas, VA, USA). Human AML cell line Ontario Cancer Institute‒Acute Myeloid Leukemia-3 (OCI-AML-3) was sourced from Cobioer (Nanjing, China) and SKM-1 from the Japanese Collection of Research Bioresources Cell Bank (JCRB). MV-4–11 cells were propagated in Iscove’s Modified Dulbecco’s Medium (IMDM, Gibco, Grand Island, NY, USA Cat# C12440500BT) supplemented with 10% fetal calf serum (FCS, AUSGENEX, Loganholme, QLD, Australia, Cat# FBSSA500-S). Other cell lines were propagated in Roswell Park Memorial Institute (RPMI) 1640 medium (Gibco, Cat# C11875500BT) containing 10% FCS. All experiments utilized genetically authenticated, microbial-free cells in their exponential phases of growth.
APG-115 (produced by Ascentage Pharma, Jiangsu, China) was dissolved in dimethyl sulfoxide (DMSO, Sigma, St. Louis, MO, USA, Cat# D8418) for in vitro experiments or suspended in 0.2% hydroxypropyl methylcellulose (HPMC, Sigma, Cat# H7509-25G) for in vivo animal studies. DAC (Cat# S120009), AZA (Cat# S178206), and Ara-C (Cat# S164806) purchased from Selleckchem were dissolved in DMSO for in vitro assays and saline for in vivo studies. RG-7388 (idasanutlin, MDM2-P53 inhibitor, MedChemExpress, Cat# HY-15676) was dissolved in DMSO for in vitro assays.
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6

Investigating Apoptosis and Necroptosis Pathways

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The histone deacetylase (HDAC) inhibitor SAHA was purchased from Selleckchem (Houston, TX, USA), the MDM2 inhibitor RG7388 was purchased from MedChemExpress (Monmouth Junction, NJ, USA). Letrozole was purchased from Selleckchem (Houston, TX, USA), and Necrostatin was purchased from Abcam (Cambridge, MA, USA). The primary antibodies against p53, phsoph-p53, p21, CDC25C, TIPM-1, CDK1, BAK, BAX, APAF1, Bcl-XL, RIP1, and cleaved PARP (1:1000) were purchased from Cell Signaling Technology (Danvers, MA, USA). Phospho-RIP3 and MLKL (1:1000) antibodies were purchase from Abcam (Cambridge). MDM2 (1:500) was purchased from Santa Cruz biotechnology (Dallas, TX, USA). The β-actin antibody (1:2000) was purchased from Sigma Aldrich chemical company (St. Louis, MO, USA). The secondary antibodies anti-rabbit, anti-mouse, HRP conjugated, and DMSO were purchased from Sigma Aldrich chemical company. Nitrocellulose membranes (0.45 µm) were purchased from Amersham (GE Healthcare Life Sciences, Marlborough, MA, USA). ECL was purchased from KPL biosolutions (Milford, MA, USA). SYTOX® Green and DEVD-amc CellEventTM Caspase-3/7 Green ReadyProbeTM were purchased from Thermo Fisher (Molecular Probes, Life Technologies, Carlsbad, CA, USA). All other chemicals used in this study were of research grade.
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