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Phenyl methyl sulfonyl fluoride (pmsf)

Manufactured by Sangon
Sourced in China, United States

PMSF is a lab reagent that inhibits serine proteases. It irreversibly binds to the active site of these enzymes, preventing them from catalyzing their normal biological functions. PMSF is commonly used in protein purification and biochemical assays to protect proteins from proteolytic degradation.

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32 protocols using phenyl methyl sulfonyl fluoride (pmsf)

1

Protein Extraction and Analysis

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For SDS PAGE, cells were lysed in RIPA buffer (Cell Signaling Technology, Danvers, MA, USA) supplemented with protease inhibitor phenylmethylsulfonyl fluoride (PMSF, 1mM, Sangon Biotech, Shanghai, China), and heated to 95°C for 5 min. Blue native PAGE was performed according to a previously described protocol (29 (link)). For blue native PAGE, cells were lysed in solubilization buffer (50 mM NaCl, 50mM imidazole, 2 mM 6-aminohexonic acid, 1mM EDTA, pH 7.00) and supplemented with 2.5% digitonin (w/v, Sigma-Aldrich) and 1mM PMSF (Sangon Biotech). Proteins resolved by SDS-PAGE or blue native PAGE were transferred to a PVDF membrane (Bio-Rad, Hercules, CA, USA). Membranes were then immunoblotted with primary antibodies and secondary antibodies. Primary and secondary antibodies was shown in Supplementary Table 1.
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2

Western Blot Analysis of VEGF, Notch1, and Hes1

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Six rats per group were used for western blot detection at the corresponding sampling time. Before protein cleavage, PMSF (Sangon Biotech) was added to RIPA Lysis Buffer I (Sangon Biotech), lysed on ice for 1 h, and the supernatant was collected. After that, the protein concentration was measured by the BCA method. Absorb 50 g of protein per sample's concentration, mix with loading buffer in a 4:1 ratio, and dilute to 20 L. Fill it up with ddH2O. The concentrated gel and separation gel electrophoresis voltages are 80 V and 100 V. Electrophoresis is complete when bromophenol blue reaches the bottom of the gel. The PVDF membrane was blocked in 5% skim milk for 2 h after the protein sample was transferred. After blocking, the membrane was gently washed with TBST, rabbit anti‐VEGFA (1:100, Santa Cruz Biotechnology), mouse anti‐Notch1 (1:100, Santa Cruz Biotechnology), and rabbit anti‐Hes1 (1:100, Santa Cruz Biotechnology). Antibodies were incubated overnight at 4°C. After 16 h, the membrane was taken out and washed on the TBST shaker for 3−5 min. After washing, add anti‐HRP goat anti‐mouse IgG‐Fc II (Cell Signaling Technology) and shake for 1 h. Darkroom imaging with ECL color developing solution. ImageJ software was used to measure the gray value of VEGFA, Notch1, Hes1, and ‐actin proteins. Finally, the final relative expression was compared according to the ratio.
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3

Protein Expression Analysis Protocol

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Cells were lysed with RIPA lysis buffer and Phenylmethyl sulfonyl fluoride (PMSF, A610425, Sangon Biotech). The protein concentration was determined by a BCA protein assay kit (Thermo). Equal amount of protein samples in SDS sample buffer (1% SDS, 62.5 mM Tris-HCl, pH 6.8, 10% glycerol, 5% mercaptoethanol, and 0.05% bromphenol blue) were boiled for 5min and subjected to reducing 10% SDS-PAGE. Proteins were separated by SDS-PAGE and electrophoretically transferred to PVDF membrane. The membrane was blocked with 5% non-fat milk powder in PBST at room temperature for 2h, and then incubated with primary antibodies at 4℃ overnight. Following washing, the membrane was incubated with secondary antibody conjugated with horseradish peroxidase (anti-rabbit or anti-mouse) at room temperature. The following antibodies were used: antibodies against phosphor-MAPKAPK-2 (Thr334) (#3041, 1:1000), and AKT (9272S, 1:1000) were purchased from Cell Signaling Technology; antibodies against AKT (phospho-ser473) (11054, 1:1000), ERK1/2 (phospho-Thr202) (12082, 1:1000) and ERK1/2 (29162, 1:1000) were purchased from Signalway Antibody; antibody against V5-tag (66007-1-Ig, 1:1000) was purchased from Proteintech.
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4

Fluorescence-based Peptide and Protein Analysis

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The fluorescence spectra were acquired on a SPEX Fluorolog 3-TCSPC spectrometer equipped with 1 cm path length cuvettes. The pH value was measured by PHS-3C Precision Ph/Mv Meter. The cell images were acquired on an Olympus Biological Microscope System. The 3 peptides, TAM-PEP (R4): TAM-RRRRNLWAAQRYGRELRRMSDKFVD, TAM-PEP (R6): TAM-RRRRRRNLWAAQRYG RELRRMSDKFVD and TAM-PEP (R8): TAM-RRRRRRRRNLWAAQRYGRELRRMSDKFVD, were synthesized by GL Biochem (Shanghai, China) Ltd. GO (XF-020, 50–200 nm) was purchased from XianFeng Nano Co. (Nanjing, China). The cDNA3.1-Bcl-xL plasmid was constructed by Genecreate Biological Engineering Co. (Wuhan, China) Tris-HCl, IPTG, PMSF, Anti-Bcl-xL antibody, Anti-ACTB antibody, HRP-conjugated Goat Anti-Rabbit IgG, Cell Counting Kit-8, Cytochrome C, BSA, RNase and lysozyme were purchased from Sangon Biotechnology Co. (Shanghai, China) BeyoECL Star and trypsin digestion solution were purchased from Beyotime Biotechnology Co. (Shanghai, China) Lipo ™ 2000 was purchased from Thermo Fisher Scientific Co.(Beijing, China)The deionized water was prepared on a Milli-Q water purification system and used throughout all experiments.
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5

Detecting NS5A-LC3 Interaction via Co-IP

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After PK-15 cells were cotransfected with NS5A-Flag and Myc-LC3 recombinant vectors for 48h, the cells were harvested and lysed with a mixture of RIPA buffer (Beyotime, China) and PMSF (Sangon Biotech, China). The lysates were used for coimmunoprecipitation with anti-c-Myc or anti-Flag agarose affinity gel (Thermo Fisher Scientific, 23620) following the manufacturer’s instructions. Briefly, 200μl of cell lysates were mixed with 10μl agarose slurry and incubated overnight at 4°C using 50μl positive control diluted in 150μl TBS (25mM Tris HCl, 0.15M NaCl, pH 7.2) as a positive control. The immunoprecipitates were washed with TBST three times and resuspended in 2× nonreducing sample buffer. After boiling for 5min, 2μl of 2-ME was added to the samples for Western blotting analysis with the specific antibodies.
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6

Western Blot Analysis of Adipocyte Markers

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Samples were lysed in RIPA buffer (P0013B, Beyotime) containing protease inhibitor cocktail (P8340, Sigma) and PMSF (A610425-0005, Sangon Biotech). Proteins were separated by SDS–PAGE and transferred onto polyvinylidene difluoride membranes. Blocking and antibody incubations were performed in 5% BSA or non-fat dry milk. Anti- PPARγ (16,643-1-AP, 1:1000), anti-FABP4 (12,802-1-AP, 1:1000), anti-PERILIPIN2 (15,294-1-AP), anti-PGC1α (66,369-1-Ig) and anti-UCP1 (23,673-1-AP) were purchased from Proteintech. Anti-β-actin (A5441, 1:1500) was purchased from Sigma-Aldrich. Antibody detection reactions were developed by enhanced chemiluminescence reagent (Millipore) and imaged using the MiniChemi 610 imaging system (Sage Creation). Quantification was done using Lane 1D software (Sage Creation).
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7

Western Blot Assay for Antiangiogenic Mechanism

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Western blot assay was used to investigate the antiangiogenic mechanism of SSA. In brief, HUVECs (2 × 105 cells per well) were seeded in 6-well plates and incubated for 2 days until they reached 80% confluence. Then the cells were incubated with various concentrations of SSA for 30 min and stimulated with 50 ng/ml VEGF165 for 4 min. Subsequently, RIPA lysis buffer (Beyotime, Shanghai, China) supplemented with PMSF (Sangon Biotech, Shanghai, China) and phosphatase inhibitor cocktail (EpiZyme, Shanghai, China) were added to each well to extract whole cell lysates. The BCA Protein Quantification Kit (Yeasen biotech, Shanghai, China) was used to determine the protein concentration. Equal amounts of protein (30 μg) were applied to 10% SDS-PAGE, and they were transferred onto a PVDF membrane (Millipore, Bill-erica, MA). The membrane was then blocked in 5% non-fat milk blocking buffer for 1 h and incubated with specific primary antibodies (1:1,000, Cell Signaling Technology, Shanghai, China) followed by exposure to HRP-conjugated secondary antibody (1:5,000, Abcam, Shanghai). All experiments were carried out at least three times.
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8

Quantification of Tissue Cytokines

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Murine serum was carefully collected from whole blood and stored in −80°C. Wound edge tissue was harvested after the mice were sacrificed, washed twice in distilled PBS, and cut into small pieces in lysis buffer containing protease inhibitor and 0.1 mM PMSF (Sangon Biotech, Shanghai, China), followed by homogenization and centrifugation (12,000 rpm, 20 min). The supernatant was then collected for further assessment of EGF (MM-0043M), bFGF (MM-0050M1), PDGF (MM-0070M1), and TGF-β1 (MM-0921M) levels using mouse ELISA kits (Jiangsu Meimian industrial, China). Tissue and serum samples underwent multiple cytokines detection by using Bio-plex proTM Mouse Cytokine Th17 Panel A 6-Plex kit (#M6000007NY, Bio Rad, USA). For tissue detection, amounts of target growth factors were normalized to the total amount of whole protein.
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9

Cloning and Purification of Phage Depolymerase K19-Dpo41

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The ORF41 gene was amplified from the DNA of the purified phage SH-KP156570 using primers 6570-ORF41-F (5′-CAGCAGCAGACGGGAGGATCCATGTCCACGATTACACA ATTC-3′) and 6570-ORF41-R (5′-CTCGAGTGCGGCCG CAAGCTTTTAGTTACTTCTCTCTTCAGC-3′). The 2292-base PCR amplification product was cloned into the N-terminal 6 × His labeled pSUMO3 expression vector (LifeSensors, United States) via BamHI and HindIII sites (New England Biolabs). The recombinant plasmid was verified by DNA sequencing and transformed into E. coli BL21 (DE3). The BL21 cells were cultivated to OD600 = 0.8. Then, the BL21 cells were induced with 0.1 mM isopropyl-β-D-thiogalactopyranoside (IPTG, Sangon Biotech, China). The mixture was centrifuged and the supernatant was discarded. The sediment was resuspended with lysis buffer [20 mM Tris–HCl (pH = 8.0), 0.5M NaCl, 10% glycerol] and phenylmethylsulfonyl fluoride (PMSF, Sangon Biotech, China) to a final concentration of 0.1 mg/mL. After centrifuged, the supernatant was collected. The Ni-NTA column (GE Healthcare, United States) was prerinsed using lysis buffer. After protein binding to Ni-NTA column, it was eluted with a gradient of 20 and 40 mM imidazole, and finally eluted with 300 mM imidazole. Then digested by SUMO protease (LifeSensors, United States). The purified depolymerase was confirmed by SDS-PAGE electrophoresis and named K19-Dpo41.
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10

Immunoprecipitation of Cactin-V5 in DCV-infected S2 Cells

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S2 cells were transfected using Cactin-V5 expressing plasmids and then infected with DCV (MOI=1) for 48 h, if necessary. For IP, cells (5×107) were collected and suspended in lysis buffer (2 mM EDTA, 50 mM Tris-HCl pH 7.4, 150 mM NaCl, 1% NP-40, 20% glycerol) supplemented withPhenylmethanesulfonyl fluoride (PMSF) (Sangon Biotech) on ice for 30 min. After centrifugation at 13,000 rpm for 10 min at 4°C, the lysates were incubated for 4 h with the anti-V5 tag antibody (Invitrogen) at 4°C, followed by further incubation with Protein A/G Agarose for1h. The beads were washed five times with lysis buffer. The proteins were eluted by boiling the beads for 5 min in 1 × SDS loading buffer and analyzed by Western blot with the anti-V5 tag (Invitrogen) or anti-p-Ser/phosphoserine (Santa Cruz).
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