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50 protocols using bolt bis tris gel

1

Protein Extraction and Western Blot Analysis

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Frozen Neurospora tissue was ground in liquid nitrogen with a mortar and pestle. Total protein was extracted in buffer (50 mM HEPES (pH 7.4), 137 mM NaCl, 10% glycerol v/v, 0.4% NP-40 v/v, and cOmplete Protease Inhibitor Tablet according to instructions for Roche # 11 836 170 001) and processed as described [130 (link)]. Protein concentrations were determined by Bradford Assay (Bio-Rad # 500–0006). For western blots, equal amounts of total protein (30 μg) were loaded per lane into 4% to 12% Bis-Tris Bolt gels (Invitrogen # NW04125/NW04127) or 8% Bis-Tris Bolt gels (Invitrogen # NW00085/NW00087). Western transfer was performed using the Mini Blot Module (Invitrogen # B1000) and BOLT Transfer Buffer (Invitrogen # BT0006) onto an Immobilon-P PVDF membrane (Millipore # IPVH00010). Primary antibodies used for western blotting were anti-CK1a (1:2,000; rabbit raised) [52 (link)], anti-Tubulin alpha (1:5,000; Sigma # T6199), anti-WC-2 (1:5,000; rabbit raised) [131 (link)], and anti-FRH (1:10,000; rabbit raised) [77 (link)]. The secondary antibodies, goat anti-mouse or goat anti-rabbit HRP, were used at 1:5,000 (Bio-Rad # 170–6516, # 170–6515). SuperSignal West Pico PLUS Chemiluminescent Substrate (ThermoFisher # 34578) or Femto Maximum Sensitivity Substrate (Thermo # 34095) was used for detection. Immunoblot quantification and normalization were performed in ImageJ.
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2

Western Blot Analysis of Serum and PFC

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For Western blot analysis of sera, 1 μl of serum for each sample was electrophoresed on 12% Bis-Tris Bolt Gels (Thermo Fisher, Italy), transferred to 0.45-μn PVDF membrane, and incubated overnight with the primary antibody rabbit anti-IL-10 (1:500, GeneTex — cod. GTX130513) and the secondary antibody goat anti-rabbit IgG-HRP (1:5000, Thermo Fisher cod. G-21040) 1 h at RT. Immunoreactivity was determined using the enhanced chemiluminescence reaction and captured by iBright CL1500 Imaging System. Densitometric analysis was performed using ImageJ software. Data were expressed as “fold of change” with respect to the nMSPLA group.
For Western blot analysis of PFC, proteins were separated by SDS-PAGE on 10% polyacrylamide gels, transferred electrophoretically to nitrocellulose membranes, and incubated overnight at 4 °C with the anti-GR primary antibody (GR, GeneTex, GTX101120; dilution 1:1000). The detection of hybridization occurs by measuring chemiluminescence to ChemiDoc (Bio-Rad). For this study, we utilized three animals in the nMSPLA group and four animals in the nMSOB, MSOB, and MSPLA groups.
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3

Western Blot Analysis of FLAG-Tagged Proteins

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Proteins were resolved by SDS-PAGE on precast gradient gels (4–12% Bis-Tris Bolt gels, Thermo Fisher) and transferred to Hybond-C membrane (Amersham Biosciences) using a Bio-Rad semi-dry transfer apparatus at 25 V for 45 min. The membrane was washed three times with PBST (137 mM NaCl, 2.7 mM KCl, 10 mM Na2HPO4, 1.8 mM KH2PO4 pH 7.4, 0.1% Tween-20) and blocked with 5% milk-PBST (PBST, 5% skim milk) for 1 hr at RT. The membrane was then incubated overnight at 4°C with 1:2000 M2 Anti-FLAG antibody (Sigma-Aldrich) in 5% milk-PBST. The membrane was washed three times with PBST and then blocked with 5% milk-PBST for 30 min at RT. The membrane was incubated with 1:1000 anti-mouse IgG HRP-linked antibody (Cell Signaling Technology) in 5% milk-PBST for 1 hr at RT. The membrane was washed three times in PBST and then developed using Luminata Forte Western HRP substrate (Millipore).
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4

Western Blot Analysis of CSR-1 and FLAG Proteins

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Samples (typically 10–40 μg of protein lysate) were resolved by SDS-PAGE on precast gradient gels (4–12% Bis–Tris Bolt gels, ThermoFisher) and transferred to Hybond-C membrane (Amersham Biosciences) using a Bio-Rad semi-dry transfer apparatus set at 25 V for 45 min. Membranes were washed 3 × 5 min with PBST (0.1% Tween-20 in PBS) and blocked for 1 h at room temperature with 5% milk-PBST (PBST with 5% w/v dried nonfat milk). Membranes were incubated overnight at 4°C in primary antibodies (Antibodies Table). Membranes were washed 3 × 10 min in PBST, blocked with 5% milk-PBST for 1 h at room temperature, then incubated for 1 h with secondary antibodies conjugated to HRP (Cell Signaling Technology). Membranes were washed 3 × 5 min in PBST and visualized using Luminata Forte Western HRP substrate (Sigma-Aldrich). Primary antibodies for FLAG [1 mg/ml], CSR-1 (antibody 49C1) [0.25 mg/ml] were used at 1:3000 and CSR-1a (antibody 56) [0.25–0.57 mg/ml] was used at 1:1000. Secondary antibodies listed in the Antibodies Table [1 mg/ml] were used at a concentration of 1:1000.
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5

Adiponectin Protein Analysis in Hamster Adipose Tissue

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4–12% Bis-Tris Bolt gels (Thermo) were loaded with 20 μg of tissue protein extract from hamster SAT or VAT, or 1 μL of hamster serum. The protein was transferred to a PVDF membrane and probed with primary antibody for adiponectin (EMD Millipore, MAB3608, 1:1000) overnight at 4 °C, followed by an incubation with horseradish peroxidase-conjugated secondary antibody. Signal detection was carried out using SuperSignal West Pico detection reagent (Thermo). Ponceau stain was used as a loading control. Band density was quantified using ImageJ.
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6

Adiponectin Protein Analysis in Hamster Tissues

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4-12% Bis-Tris Bolt gels (Thermo) were loaded with 20 μg of tissue protein extract from hamster SAT or VAT, or 1 μL of hamster serum. The protein was transferred to a PVDF membrane and probed with primary antibody for adiponectin (EMD Millipore, MAB3608, 1:1000) overnight at 4 °C, followed by an incubation with horseradish peroxidase-conjugated secondary antibody (1:2000). Signal detection was carried out using SuperSignal West Pico detection reagent (Thermo). Ponceau stain was used as a loading control. Band density was quantified using ImageJ.
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7

Western Blot Analysis of Protein Targets

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Proteins were resolved by SDS-PAGE on precast gradient gels (4-12% Bis-Tris Bolt gels, ThermoFisher) and transferred to Hybond-C membrane (Amersham Biosciences) using a Bio-Rad semi-dry transfer apparatus (25 V for 45 min). After washing with PBST (0.1% (v/v) Tween-20 in PBS) and blocking with 5% milk-PBST (137 mM Sodium Chloride, 10 mM Phosphate, 2.7 mM Potassium Chloride, pH 7.4, and 5% w/v dried nonfat milk), the membrane was incubated overnight at 4 C with antibodies (listed below). After 3 x 5min washes in PBST the membrane was blocked once again with 5% milk-PBST for one hour at room temperature then incubated for 1 hour with secondary antibodies conjugated to HRP (Cell Signaling Technology). The membrane was washed 3 x 10 min in PBST and then visualized by Luminata Forte Western HRP substrate (Millipore). Antibody concentrations for western blots were as follows: EMB-4 1:200; CSR-1 1:1000; HRDE-1 1:1000; GFP 1:1000; Tubulin 1:10000.
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8

Western Blot Protein Analysis Protocol

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Samples were prepared in sample buffer (NuPAGE LDS Sample Buffer (Invitrogen), 100 mM dithiothreitol (DTT)), boiled for 5 min at 95°C, and subjected to SDS-PAGE using 4–12% Bis-Tris Bolt gels (Invitrogen) in MOPS running buffer (Invitrogen). Proteins were transferred to Immobilon-FL PVDF membrane (Millipore) in transfer buffer containing 1X NuPAGE transfer buffer (Invitrogen), 20% methanol, and 0.05% SDS for 70 min. Membranes were blocked using Odyssey blocking buffer (TBS) (Li-COR) for 30 min at room temperature, and incubated with primary antibody diluted in Odyssey blocking buffer containing 0.05% Tween-20 overnight at 4°C. Membranes were rinsed three times with Tris-buffered saline (TBS) containing 50 mM Tris-HCl, pH 7.4, 150 mM NaCl, and 0.1% Tween 20 (TBS-T), and incubated with secondary antibodies for 1 hr at room temperature. Membranes were again rinsed three times with TBS-T and once with TBS containing no detergent, and membranes were immediately scanned using an Odyssey Infrared Imager (Li-COR).
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9

Quantitative Western Blot Analysis

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For Western blot analyses of proteins, cells were lysed in 4% SDS containing a protease inhibitor cocktail and homogenized using column-based centrifugation (Omega Bio-Tek, Norcross, GA, USA). The BioRad DC assay (Bio-Rad Laboratories, Hercules, CA, USA) was used for protein quantification. Equal amounts of reduced protein samples were separated on 4–12% Bis-Tris BOLT gels (Invitrogen, Carlsbad, CA, USA), transferred onto Immun-Blot PVDF (BioRad), and blocked in Odyssey blocking buffer (LI-COR, Lincoln, NE, USA). Primary antibodies were used targeting the following, ODC antizyme 1 (OAZ1) [21 (link)], spermidine synthase (SRM) (#19858-1-AP; Proteintech, Rosemont, IL, USA), histone deacetylase 10 (HDAC10) (#H3413; Sigma), and transglutaminase 2 (TGM2) (#ab421; Abcam, Cambridge, MA, USA), with pan histone H3 (#05-928; Upstate Cell Signaling Solutions, Lake Placid, NY, USA) as a normalization control. Secondary, species-specific, fluorophore-conjugated antibodies allowed visualization and quantification of bands via near-infrared imaging on an Odyssey detection system (LI-COR). Blot images were analyzed using Image Studio software (LI-COR, Lincoln, NE, USA).
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10

Western Blot Analysis of NANOG Expression

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Whole cell protein extracts were isolated and western blotting was performed using standard procedures using pre-cast 10% Bis-Tris Bolt gels (Invitrogen). Primary antibody used was goat-anti-NANOG (1: 500, 1 μg/ml, AF1997, R&D Systems), secondary antibody conjugated to fluorophores was donkey-anti-goat-IRDey680 (1:500, 926-68074, Li-Cor). Rabbit-anti-Laminin B (1:1000, AB16048, Abcam) served as a loading control and was detected by chemi-iluminescence. Imaging occurred on an Odyssey imager (Li-Cor).
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