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6 protocols using amberlite xad16n resin

1

Actinobacterial Secondary Metabolite Production

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Each actinobacterial isolate was grown in a 100 mL Erlenmeyer flask containing 30 mL of liquid culture medium with a composition identical to the solid medium from which the isolate was obtained, but without the addition of cycloheximide and nalidixic acid. The flasks were incubated at 28°C, 100 rpm, in the dark. After 4 days of incubation, 0.5 g of Amberlite XAD16N resin (Sigma-Aldrich, MO, United States) were added to the culture medium and incubation continued for three additional days. Each culture was extracted together with the resin by adding 30 mL of a solution of acetone/methanol 1:1 (v/v). The organic layer was recovered and dried in a rotary evaporator to yield an organic extract that was weighted before being dissolved in dimethyl sulfoxide (≥99.9%, DMSO; Sigma-Aldrich, MO, United States) to prepare stock solutions of 10, 3.0, and 1.0 mg mL−1, which were used for the bioactivity assays.
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2

Extraction and Preparation of Bioactive Compounds

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Fifty mL of distilled water was added and samples were sonicated for 1 min at maximum speed. The same volume of acetone was added and, after 50 min mixing at room temperature, samples were evaporated under nitrogen stream down to half of their volume. About 1 g of Amberlite XAD16N resin (Sigma-Aldrich) was added to each sample. After 50 min of mixing at room temperature, 18 mL of water was added for a resin washing step. A centrifugation step (15 min at 3500 g at room temperature) allowed the elimination of water and the resin was incubated with 10 ml acetone for 50 min. Centrifugation for 15 min at room temperature allowed cells to settle and removal of the resin, while the supernatants, that were the final extracts, were freeze-dried and stored at −20 °C until testing. Before performing the cytotoxicity assay, extracts were first diluted at 1 mg/mL with sterilized MilliQ water and 2.5% DMSO.
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3

Extraction and Analysis of Bioactive Compounds

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The Amberlite™ XAD-16N resin, tetracycline, 2,2-diphenyl-1-picrylhydrazyl (DPPH), ascorbic acid, and quercetin (≥95%) were obtained from Sigma-Aldrich (St. Louis, MO, USA). The gallic acid (99.3%) was obtained from ChromaDex (Los Angeles, CA, USA). Acetonitrile, methanol, ethyl acetate, water, and formic acid (LC-MS grade) were also purchased from Sigma-Aldrich (St. Louis, MO, USA).
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4

Anti-inflammatory Assay of Natural Extracts

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Chemical extraction was performed as in Lauritano et al.10 by using Amberlite XAD16N resin (20–60 mesh, Sigma-Aldrich). The final extracts were freeze-dried and stored at −20 °C until screening. Before performing the assays, extracts were first diluted at 1 mg/mL with MilliQ water and 2.5% DMSO. A triplicate of control plus the same concentration of DMSO used in test wells was used in all assays. The anti-inflammatory assay was performed as in Lind et al. (2013). Briefly, ~106 human monocyte THP-1 cells/mL (ATCC(R) TIB-202TM) supplemented with 50 ng/mL phorbol 12-myristate 13-acetate (PMA, SigmaAldrich) were seeded in 96 well plates and incubated at 37 °C, 5% CO2 for 48 h in RPMI-1640 medium (Biochrom;10%FBS). After 72 h, 80 μL fresh RPMI medium and 10 μL/well (tested concentration 100 μg/mL) of test extract were added. The test was performed in triplicate. After incubation for 1 h, all samples were incubated with 1 ng/mL lipopolysaccharide (LPS; final concentration) for another 6 h at 37 °C. Enzyme-linked immunosorbent Assay (ELISA) was used to test TNFα secretion as in Lauritano et al.10 .
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5

Extraction of Microbial Bioactive Metabolites

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Crude extracts were prepared by growing each isolate in 250 mL Erlenmeyer flasks containing 100 mL of ISP2 medium or marine broth (without the addition of cycloheximide and streptomycin) (Table S1). The flasks were incubated in a rotatory incubator (Model 210, Comecta SA, Barcelona, Spain) at 28 °C, 100 rpm, in the dark. Cultures were grown for 1–2 weeks, depending on their growth rate, after which 1.5 g of Amberlite® XAD16N resin (Sigma-Aldrich, MO, USA) was added to the cultures and left to incubate for an additional week. Cultures were extracted twice with methanol/acetone 1:1 (v/v). The organic layer was dried in a rotary evaporator and the resulting extract was dissolved in dimethyl sulfoxide (DMSO, ≥99.9%, Sigma-Aldrich, MO, USA) to obtain stock solutions with final concentrations of 3.0 mg mL−1 and 1.0 mg mL−1, to be tested in the bioactivity assays.
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6

Solvent Extraction Protocol using Amberlite XAD-16N

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Acetonitrile (HPLC grade), methanol (extra pure) and n-butanol (extra pure) were purchased from Merck (Darmstadt, Germany).
The HPLC grade deionized water was produced using Barnstead/thermolyne, USA (Model: d8992-33 Nano pure infinity). Amberlite XAD-16N resin,
particle size of 20-60 mesh, pore size of 200 Aº and 800 m2.g-1, was purchased from Sigma.
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