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10 protocols using prolidase

1

Fructoselysine Quantification Protocol

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Fructoselysine was purchased from Carbosynth Limited (Berkshire, UK). Glycerol, acetone, leucine aminopeptidase, pepsin, prolidase, pronase E and Tris were purchased from Sigma-Aldrich (Zwijndrecht, The Netherlands). n-Hexane was from VWR international (Amsterdam, The Netherlands). Formic acid (99%–100%, analytical grade) was purchased from Merck (Darmstadt, Germany). Phosphate-buffered saline (PBS) was obtained from Gibco (Paisley, UK). Methanol and acetonitrile (ACN), both in UPLC/MS grade were purchased from BioSolve BV (Valkenswaard, The Netherlands).
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2

Analytical Protocol for [2H5]-PhIP

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PhIP was purchased from Toronto Research Chemicals (Toronto, ON, Canada). 2-Amino-1-methyl-6-[2H5]-phenylimidazo[4,5-b]pyridine ([2H5]-PhIP, 99% isotopic purity) was a gift from Dr. Mark Knize and Dr. Kristen Kulp (Lawrence Livermore National Laboratory, Livermore, CA). Human serum albumin, trypsin, chymotrypsin, pronase E, leucine aminopeptidase, prolidase, meta-chloroperoxybenzoic acid, tert-butyl hydroperoxide, dimethyldioxirane and sodium periodate, and LC-MS grade formic were purchased from Sigma-Aldrich (St. Louis, MO). LC-MS grade solvents were purchased from Fisher Scientific (Pittsburgh, PA). All other chemicals were ACS grade, and purchased from Sigma-Aldrich unless stated. Isolute C18 solid-phase extraction (SPE) columns (25 mg) were from Biotage (Charlotte, NC). Pierce Albumin Depletion Kit was from Thermo Fisher (Rockford, IL). Amicon Ultra centrifugal filter units (10,000 mw cutoff) were from Millipore (Billerica, MA). Human plasma was purchased from Bioreclamation LLC (Hicksville, NY).
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3

Prolidase Modulation of Keratinocyte Functions

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The cells (5–8th passages) were treated with prolidase from the porcine kidney (Sigma Aldrich, Saint Louis, MO, USA) at the concentrations of 1–50 nM. The enzyme, delivered as a lyophilized powder, was reconstituted in sterile phosphate buffer (PBS; pH 7.4, PanBiotech, Germany). For wound healing, proliferation, and Western immunoblotting HaCaT cells were pretreated with LY294002, selective PI3K inhibitor (Cell Signaling Technology, Danvers, MA, USA) at the working concentration of 50 μM for 2 h before treatment with prolidase (1–50 nM, 30 min and 24 h). Keratinocytes were subjected to pretreatment with Gefitinib (Sigma Aldrich, Saint Louis, MO, USA), an EGFR inhibitor at the working concentration of 2 µM for 2 h before treatment with prolidase (1–50 nM, 3 h and 24 h). The cells pretreated with Gefitinib were analyzed by Western immunoblotting and wound healing assay.
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4

Quantification of Maillard Reaction Products

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Acetonitrile (LC-MS grade) and methanol (HPLC grade) were obtained from VWR Prolabo (Darmstadt, Germany). Freshly double distilled water (Bi 18E double distillation system, QCS, Maintal, Germany) was used for solvents production for LC-MS analysis. Nonafluoropentanoic acid (NFPA) was from Sigma-Aldrich (Steinheim, Germany). Reference material for calibration of MRPs was synthesized in our laboratory as described before: N-ε-fructosyllysine [30 (link)], pyrraline [31 (link),32 (link)], CML [17 (link)], CEL [17 (link)], and MG-H1 [17 (link)]. Stable isotope labelled internal standards for HPLC-MS/MS analysis were synthesized similarly but using [13C6,15N2]lysine ([13C6,15N2]Pyr) and [13C6]arginine ([13C6]MG-H1) instead of the unlabeled compounds. The synthesis of [13C3]CEL was described recently [29 (link)]. [2H2]CML was purchased from PolyPeptide (Strasbourg, France), [13C6,15N2]lysine from Campro (Berlin, Germany), and [13C6]arginine from Eurisotop (Saarbrücken, Germany). Enzymatic hydrolysis was performed by using pronase E (Merck, Darmstadt, Germany) and pepsin, aminopeptidase and prolidase (all from Sigma-Aldrich, Steinheim, Germany).
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5

Maillard Reaction Product Purification

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All chemicals used were of analytical grade unless otherwise stated. Aminopeptidase M was obtained from Merck (Darmstadt, Hesse, Germany). Pepsin, pronase E and prolidase were purchased from Sigma-Aldrich (Shanghai, China). Acetonitrile and formic acid were HPLC grade from Merck (Darmstadt, Hesse, Germany). The solid-phase extraction (SPE) cartridge, Cleanert PEP-2 SPE cartridge (200 mg/6 mL, Bonna-Agela Technologies Inc., Tianjin, China), was used for purification of Maillard reaction products. 3-Deoxyglucosone (3-DG, purity > 99.99%) was obtained from Toronto Research Chemicals (Toronto, ON, Canada). Pyrraline standard sample (purity > 99.99%) was purchased from PolyPeptide Laboratories (San Diego, CA, USA).
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6

Cytochrome c ELISA Assay with Glo1 Antibodies

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Rat monoclonal anti-Glo1 antibody (SAB4200193) and anti-Rat IgG-biotin conjugate (B7139) were from Sigma-Aldrich (Poole, Dorset, UK). Human cytochrome c ELISA kit (QIA74) was from Oncogene Research Products (San Diego, CA, USA). Mechlorethamine (C2942) was from Cambridge Bioscience Ltd. (Cambridge, UK). Mitomycin C (M4287, from Streptomyces caespitosus), cisplatin (479306), S-(+)-camptothecin (C9911), doxorubicin (D1515), etoposide (E1383), paclitaxel (T7402), vincristine (V8879), and methotrexate (06563) were from Sigma-Aldrich. S-p-Bromobenzylglutathione cyclopentyl diester was prepared in-house (8 (link)). D-Lactic dehydrogenase (L9636), pepsin (EC 3.4.23.1; porcine stomach mucosa; P6887), pronase E (EC 3.4.24.31, type XIV, from Streptomyces griseus; P5147), prolidase (EC 3.4.13.9; porcine kidney; P6675), and leucine aminopeptidase (EC 3.4.11.2, type VI, porcine kidney, L9776) were from Sigma-Aldrich. Geneticin (700 µg G-418) was from Fisher Scientific (Loughborough, UK). The HEK293 cell line (CRL-1573) was ATCC (Virginia, USA), and vectors pIRES2-GLO1-EGFP and pIRES2-EGFP were prepared in-house (13 (link)).
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7

Quantification of Glycation Adducts

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LC-MS grade methanol and acetonitrile were obtained from Fisher Chemical (Loughborough, UK). Pepsin, pronase E, sulfuric acid and creatinine were from Merck (Darmstadt, Germany), and CML and [ 2 H 2 ]CML were obtained from PolyPeptide Group (Strasbourg, France). 2-Amino-2-(hydroxymethyl)propane-1, 1-diole-hydrochloride (TRIS-HCl) was purchased from Serva Feinbiochemica (Heidelberg, Germany). Nonafluoropentanoic acid (NFPA), hydrochloric acid, prolidase, leucine aminopeptidase and n-heptane were from Sigma-Aldrich (Seelze, Germany). Lithium citrate buffer, lithium citrate/borate buffer, lithium hydroxide and ninhydrin were purchased from Sykam (Fürstenfeldbruck, Germany). Wieninger's catalyst was obtained from Honeywell (Seelze, Germany). Boric acid was purchased from Carl Roth (Karlsruhe, Germany) and sodium hydroxide from Grüssing (Filsum, Germany). Water was distilled (twice) before analysis.
Pyrraline [11] and MG-H1 [12] were synthesized according to the specified literature. The synthesis of [ 13 C 6 , 15 N 2 ] pyrraline and [ 13 C 6 ]MG-H1 was performed in the same manner but using [ 13 C 6 , 15 N 2 ]lysine (pyrraline) and [ 13 C 6 ]arginine (MG-H1) instead of the unlabeled amino acids.
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8

Quantification of Advanced Glycation Endproducts

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The three dipeptides (Lys-Gly, Lys-Ala, Lys-Phe) and three tripeptides (Lys-Gly-Gly, Lys-Gly-Ala, Lys-Gly-Phe) were from LifeTein LLC. (Beijing, China). Standards of 3-Deoxyglucosone (3-DG, purity > 99.99%) and pyrraline (purity > 99.99%) were from Toronto Research Chemicals (Toronto, ON, Canada). Formic acid (for LC-MS, 99%) was from Aladdin Biochemical Technology Co., Ltd. (Shanghai, China). Solid-phase extraction (SPE) cartridges (Cleanert PEP-2, 200 mg/6 ml) for purification were from Bonna-Agela Technologies Co., Ltd. (Tianjin, China). Chromatographic grade acetonitrile was from Merck (Darmstadt, Germany). Pepsin, pronase E, and prolidase were from Sigma-Aldrich (Shanghai, China). All other reagents were of analytical grade from Macklin Inc. (Shanghai, China).
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9

Quantification of Methionine Oxidation

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Bovine serum albumin, 2,4-dinitrophenylhydrazine (DNPH), l-methionine, pepsin (3839 U/mg protein), leucine aminopeptidase (18 U/mg protein), prolidase (553 U/mg protein) and pronase E (4,000 PU/mg) were purchased from Sigma-Aldrich (Steinheim, Germany). HPLC-MS/MS grade methanol and ethylene glycol were from Fisher Scientific (Loughborough, United Kingdom) and sodium dodecyl sulfate (SDS) and urea from Roth (Karlsruhe, Germany). Guanidinium hydrochloride, 5,5ʹ-dithio-bis(2-nitrobenzoic acid) (Ellman's reagent, DTNB), and l-MetSO 2 were obtained from Alfa Aesar (Karlsruhe, Germany). Reduced glutathione and ninhydrin were purchased from Merck (Darmstadt, Germany) and l-MetSO from Bachem (Bubendorf, Switzerland). Tin(II) chloride from Laborchemie (Apolda, Germany) was used. The water used for the preparation of buffers and solutions was double-distilled (Destamat Bi 18E; QCS GmbH, Maintal, Germany). The [ 2 H 3 ] and [ 2 H 8 ] isotopologues of MetSO and MetSO 2 as well as pyrraline were synthesized as published previously [21, 22] .
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10

Synthesis and Characterization of Glycation Products

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Unless otherwise stated, chemicals were purchased from commercial suppliers without further purification: NaCl (≥ 99.5%, Fisher Scientific), NaOH (97%, VWR chemicals), HCl (≥ 37%, VWR chemicals), H 2 SO 4 (> 96%, VWR chemicals), heptafluorobutyric acid (HFBA, 99%, Alfa Aesar), nonafluoropentanoic acid (NFPA, 97%, Sigma Aldrich), pepsin (3839 U/mg protein, Sigma Aldrich), pronase E (4000 PU/mg, Merck), leucine aminopeptidase (18 U/mg protein, Sigma Aldrich), prolidase (553 U/mg protein, Sigma Aldrich), acetonitrile (HPLC-MS/MS grade, VWR), tris-(hydroxymethyl)-aminomethane (TRIS, > 99.9%, Carl Roth), bidistilled water, N-ε-benzoyllysine, CML, [ 2 H 2 ] CML and furosine (PolyPeptide). The following substances were synthesized according to methods stated in the literature: Pyrraline [23, (link)24] (link), MG-H1 [25] (link), CEL [25] (link), maltosine [26] (link), pentosidine [27] (link). The syntheses of [ 13 C 6 , 15 N 2 ] pyrraline, [ 13 C 6 ] MG-H1 and [ 13 C 6 , 15 N 2 ] maltosine were performed in the same manner but using [ 13 C 6 , 15 N 2 ] lysine (pyrraline and maltosine) and [ 13 C 6 ] arginine (MG-H1) instead of the unlabeled amino acids. For the synthesis of [ 13 C 3 ] CEL, [ 13 C 3 ] pyruvic acid was used instead of unlabeled pyruvic acid.
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