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6 protocols using anti his monoclonal antibody

1

eIF1A Interaction with Ago2 Domains

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E. coli expressed GST-tagged human eIF1AX (known as eIF1A), or globular domain (GD, 25 ~114aa), or N-tail deletion (ND, 25~144aa) or C-tail deletion (CD, 1~114aa) were purified by GST-pull down assays (#88822, Thermo Scientific) with glutathione magnetic beads from pre-cleared cell lysates of HEK293 cells stably expressing HA-Ago2 in the presence of 10μg/ml Ribonuclease A treatment. Western blot assays were performed with anti-Ago2 monoclonal antibodies (Abcam, ab57113, 1:1000 dilution). For the Ago2 domain screening assays, E. coli expressed His-tagged L1, PAZ, sumo-MID, PIWI domains and Sumo, which were purified by Ni-NTA resin, were performed GST-pull down assays with E. coli expressed GST-eIF1A. Western blot assays were performed with anti-His monoclonal antibodies (Cell Signaling, #2366S, - 1:1000 dilution).
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2

eIF1A Interaction with Ago2 Domains

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E. coli expressed GST-tagged human eIF1AX (known as eIF1A), or globular domain (GD, 25 ~114aa), or N-tail deletion (ND, 25~144aa) or C-tail deletion (CD, 1~114aa) were purified by GST-pull down assays (#88822, Thermo Scientific) with glutathione magnetic beads from pre-cleared cell lysates of HEK293 cells stably expressing HA-Ago2 in the presence of 10μg/ml Ribonuclease A treatment. Western blot assays were performed with anti-Ago2 monoclonal antibodies (Abcam, ab57113, 1:1000 dilution). For the Ago2 domain screening assays, E. coli expressed His-tagged L1, PAZ, sumo-MID, PIWI domains and Sumo, which were purified by Ni-NTA resin, were performed GST-pull down assays with E. coli expressed GST-eIF1A. Western blot assays were performed with anti-His monoclonal antibodies (Cell Signaling, #2366S, - 1:1000 dilution).
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3

Ubiquitylation Assay via Western Blot

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Proteins were extracted using the KGN cell lysis buffer and subjected to western blotting (Beyotime, Shanghai, China). Briefly, the cell lysates were centrifuged at 12,000 rpm for 20 min at 4 °C, and the supernatants were mixed with 5 μL of primary antibodies and 40 μL of protein A + G agarose suspension beads (Santa Cruz, Dallas, Texas, USA) to incubate overnight at 4 °C. The beads were rinsed with a lysis buffer the following day. Next, the samples were boiled in a loading buffer for 10 min at 100 °C before subjecting them to western blotting.
KGN cells were transfected using the His-Ub plasmid and then treated with 30 μM MG132, (Sigma-Aldrich) for 6 h. Subsequently, a portion of the lysates was incubated with anti-His monoclonal antibody (Cell signaling, Rabbit, 2365, 1:1000) and used for ubiquitylation experiments; bead-binding proteins and the rest of the lysates were analyzed with IB.
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4

Co-immunoprecipitation and in vitro Ubiquitination Assays

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For the co-immunoprecipitation (co-IP) assays, A549 cells were transfected with Flag-tagged RPS27a or vector control, then lysed. Subsequently, 70% of the lysate was incubated with anti-Flag monoclonal antibody (Cell signaling technology, USA) or control IgG, and the remaining 30% of the lysate was analyzed with IB. In vitro ubiquitination experiments followed protocols from previous studies using the Ni2+-NTA purification method. The A549 cells were transfected with His-Ub plasmids after transfection of RPS27a-siRNA for 24 h, then treated with 40 μM MG132 for 6 h. Subsequently, 70% of the lysate was incubated anti-His monoclonal antibody (Cell signaling technology) and used for ubiquitination experiments with co-IP assays; the bead-bound proteins and the other 30% of the lysate were analyzed with IB [29 (link)].
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5

Protein Separation and Immunoblot

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Protein samples were separated on a 10 % SDS-PAGE gel, then stained with Coomassie brilliant blue or transferred to a polyvinylidene fluoride membrane (Millipore). The membranes were blocked with 5 % skim milk and immunoblotted with an anti-His monoclonal antibody (Cell Signaling Technology, #2366).
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6

Reagents for Protein Purification and Analysis

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ATP, Mops, HEPES, Tris, MgCl2, MnCl2, NaCl, EDTA, Brij 35, glycerol, acetic acid, lysozyme, DNAse, RNAse, Phenix imaging film, BSA, Ni-resin and liquid scintillant were obtained from Fisher Scientific. γ-32P-ATP was obtained from NEN Products. SRPIN340 was obtained from Sigma. FuGene reagent was obtained from Promeg and Lipofectamine 2000 was obtained from ThermoFisher. Protease inhibitor cocktail, EGF, and TG003 were obtained from Roche. Anti-SRPK1 monoclonal antibody was purchased from BD Biosciences. Anti-CLK1 polyclonal antibody was purchased from Aviva. Anti-SRSF1 monoclonal antibody was purchased from Life Tech. Anti-GFP monoclonal antibody, anti-HA monoclonal antibody, anti-His monoclonal antibody and Protein G beads were purchased from Cell Signaling. Anti-GST monoclonal antibody was purchased from BioLegend. InstantBlue was purchased from Expedeon.
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