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Avance 3 nmr system

Manufactured by Bruker
Sourced in Germany, United States

The Avance III NMR system is a nuclear magnetic resonance (NMR) spectrometer manufactured by Bruker. It is designed to analyze the molecular structure and properties of chemical compounds using the principles of NMR spectroscopy. The core function of the Avance III NMR system is to measure and interpret the interactions between nuclear spins and an applied magnetic field in order to provide detailed information about the chemical composition and structure of a sample.

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6 protocols using avance 3 nmr system

1

MRI Optimization with Lenz Lens

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All magnetic resonance imaging experiments were performed on an Avance III NMR system (Bruker, Rheinstetten, Germany), controlled by the ParaVision® 5.1 imaging software (Bruker). The NMR scanner was operated at the proton Larmor frequency of 500.13 MHz in combination with a Micro 5 micro-imaging probe base and a Micro 5 gradient system, driven at 40 A, which results in a maximum gradient strength of 2 Tm−1.
Throughout the experiments, the attenuation (ATT) was varied from 70 dB to 50 dB (0.025W ≤ P ≤ 2.5W) in steps of 0.5 dB. The relationship between ATT and P is given by
P=10ATT0-ATT10dBP0,
where P0 = 1 W and ATT0 = 54 dB. Acquisition parameters were set to: repetition time TR = 500 ms, echo time TE = 5.3 ms, flip angle α = 90°, effective slice thickness SI = 100 μm, field of view FOV = (1.92mm)2, matrix MTX = 64 × 64 and hence 30 × 30μm−2 in-plane resolution, number of averages NEX = 4 and an acquisition time (TA) per scan of 2 min 8 s.
Obtained MR reference images without any Lenz lens present are given in S3 Fig, while the acquired image sequences for LL1-LL4 are depicted in S4S7 Figs. The effect of varying pulse power is clearly visible in these four images, from which the optimal power can be derived by inspection.
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2

In Vivo Mouse Brain MRI Imaging

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Mice were anesthetized using 5% isoflurane in O2/N2O and maintained at 2% isoflurane in O2/N2O with a nose cone. Respiration and external body temperature were monitored during imaging using an MR-compatible small animal monitoring and gating system (SA Instruments, Stony Brook, NY, USA). External body temperature was maintained at 37°C with a heating circulator bath (Thermo Scientific Haake, Karlsruhe, Germany). Mouse heads were held in place with a tooth bar inside a custom-built 24 mm diameter, 300 MHz inductively coupled quadrature RF volume coil (NRC Institute for Biodiagnostics, Winnipeg, MB, Canada). The entire apparatus was placed inside a Bruker BGA12-S actively shielded gradient system with integrated shim coils (Bruker BioSpin, Milton, ON, Canada). All MR experiments were performed on a 7 T 21 cm Bruker Avance III NMR system with Paravision 5.0 (Bruker BioSpin). The mouse brain was imaged in prone position rostral to caudal using 12 slices with a slice thickness of 0.75mm and an interslice distance of 1.0mm.
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3

Analytical Characterization of Compound 4

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NMR analyses
were performed with a 500 MHz Bruker AVANCE-III NMR-system. The multiplicities
are abbreviated as follows: s = singlet, d = doublet, t = triplet,
m = multiplet, br = broad signal, dd = doublet of doublets, etc. MS
analyses were performed with a linear ion trap quadrupole mass spectrometer
(QTRAP, Applied Biosystems SCIEX) equipped with a Turbo Ion Spray
source. Purity of the reference standard 4 was determined
with HPLC. Ruthenium content in the final preparation was analyzed
with inductively coupled plasma mass spectrometry (ICP-MS; PerkinElmer,
Elan DRC Plus). Commercial standards were used for instrument calibration.
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4

NMR-Based Protein-AuNP Binding Assay

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For binding capacity measurements, 20 μM of 15N-labeled GB3 or 15N-labeled Ubq was mixed with AuNPs with varying concentrations of 0, 20, 40, 60, and 80 nM. The protein peak intensities are measured by 2D TROSY-HSQC experiment36 (link) on a 600 MHz Bruker AVANCE III NMR system equipped with a CP-QCI cryoprobe. Detailed sample preparation and parameters used for NMR experiments are presented in the Supporting Information.
The fraction (r) of unbound (free) proteins was determined by the ratio of peak intensities of the AuNP-containing samples (I) versus the protein control sample (I0) for each residue (r = I/I0), after normalization by the 15N-Trp reference peak. The AuNP-bound protein NMR signals will diminish due to its extremely short T2 relaxation times.30 (link),31 The concentration of bound proteins ([protein]bound) was calculated using the total protein concentration ([protein]total) using the following equation, as described previously31 [protein]bound=(1r)[protein]total
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5

Ozonation-assisted Chromatographic Separation

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In order to ascertain the structures of the main products, the method presented in the “Ozonation experiments” section was used to prepare a sample, except that the concentration was 100 mg/L and the ozonation was stopped after 30 min. Subsequently, the sample was evaporated in a rotavapor. After evaporation, the sample was dissolved in chloroform, and 200 mg Celite was added. The sample was evaporated and transferred to a RediSep Rf Teledyne ISCO cartridge (5 g). The chromatographic separation was performed using automated flash system (CombiFlash EZ prep, Teledyne ISCO) equipped with a Redi Sep Rf Gold HP silica column (4 g) and using ethyl acetate:petrol ether as the eluent system (gradient program). After separation, the fractions were evaporated and analyzed using 1H NMR and 13C NMR experiments run on a MHz Bruker AVANCE-III NMR-system with a liquid nitrogen-cooled Prodigy BBO probe.
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6

LC-MS and NMR Analysis of Hydroxylated Indole Alkaloids

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LC-MS was performed using Prominence HPLC (Shimadzu, Kyoto, Japan) equipped with a Cadenza CD-C18 column (Imtakt, Kyoto, Japan) and an ESI-MS detector micrOTOF-Q II (Bruker Daltonics, Billerica, MA, USA). After the labeling reaction, 10 μL of the mixture was injected and monitored. A linear elution gradient from 0% acetonitrile containing 0.1% formic acid to 100% acetonitrile containing 0.1% formic acid for 20 min was performed. The flow rate was maintained at 0.2 mL/min, and the absorbance of the eluate was monitored at 210 nm. MS analysis was performed in the negative ion mode.
The structural assignment of 8-HHIA and 9-HHIA was performed using a 500 MHz Bruker AVANCE III NMR system (Bruker Biospin, Billerica, MA, USA) with 1H-13C heteronuclear multiple quantum correlation (HMQC), distortionless enhancement by polarization transfer (DEPT), heteronuclear multiple bond correlation (HMBC), and two-dimensional correlated spectroscopy (COSY) NMR experiments.
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