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Oligo dt and random primers

Manufactured by Takara Bio
Sourced in Japan, United States

Oligo-dT and random primers are commonly used in reverse transcription reactions to generate complementary DNA (cDNA) from RNA templates. Oligo-dT primers bind to the poly-A tail of mRNA, while random primers can bind to various regions of the RNA molecule, allowing for the amplification of both coding and non-coding RNA species. These primers serve as starting points for the reverse transcription process, enabling the conversion of RNA into a DNA format suitable for downstream applications, such as PCR, gene expression analysis, and library construction.

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7 protocols using oligo dt and random primers

1

Liver lipid profiling and gene expression

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Livers were harvested after collecting blood. For lipid accumulation analysis, left liver lobes were fixed, embedded in paraffin and sectioned for staining with Oil Red O. Total RNA from livers was extracted using TRIzol reagent (Life Technologies, Grand Island, NY, USA). cDNA was synthesized using oligo‐dT and random primers (Takara, Tokyo, Japan). The levels of target genes were measured using quantitative real‐time polymerase chain reaction (PCR) (LightCycler 480 II; Roche, Switzerland) with SYBR green detection (Takara). The level of each target gene was normalized to the β‐actin level. All primer (Sangon Biotech, Shanghai, China) sequences are shown in Table S1.
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2

Quantitative PCR Expression Analysis

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RNA was extracted using TRIzol reagent (Life Technologies, Grand Island, NY, USA) and cDNA was synthesized using oligo-dT and random primers (TaKaRa). qPCR was performed using the ABI Prism 7900HT sequence detection system (Applied Biosystems, Foster City, CA, USA) with commercial primers generated for the system. β-actin was used as the internal control. Primers were listed in Additional file 1.
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3

Placental Gene Expression Analysis

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Expression of select placental genes was verified by real-time quantitative PCR. Total placental RNA was isolated using RNAiso (TaKaRa, Japan), and cDNA was synthesized using oligo-dT and random primers (TaKaRa, Japan) for real-time quantitative PCR (ABI Prism 7900HT; Applied Biosystems, Foster City, CA). GAPDH was the internal control. Full list of primer sequences is shown in Supplementary Table 1.
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4

Mycotoxin Effects on Chicken Hepatocytes

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Cell viability was assessed according to a previously described method50 (link). Chicken embryo primary hepatocytes were seeded at a density of 10000 cells/well in 96-well plates and cultured overnight. The hepatocytes were treated with different concentrations of AFB1 (0–10 μg/mL), ZEN (0–120 μg/mL), or OTA(0–10 μg/mL). After 48 h, 0.5 mg/mL MTT (Sigma-Aldrich, Shanghai) was added to each well. We extracted the total RNA from mycotoxin-treated or untreated chicken primary hepatocytes using Trizol reagent (Invitrogen, Carlsbad, CA, USA). Total RNA (2 μg) was reverse transcribed using M-MLV reverse transcriptase (Promega, Madison, WI, USA) with oligo d(T) and random primers (Takara Biotechnology, Dalian, China). The obtained cDNA products were used as templates for CYP1A4, CYP2D20 and CYP3A37 transcript quantification by RT-PCR. GAPDH was used as an internal reference to normalize gene expression. The expression levels were calculated using the 2−ΔΔCt method51 (link).
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5

Quantification of miRNAs, lncRNAs, and mRNAs

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Total RNA was isolated from cultured cells and tissue samples by TRIzol reagent (Invitrogen, CA, USA) according to the manufacturer’s instructions. To quantify mature miRNAs, quantitative real-time PCR was performed using TaqMan miRNA assay probes (Applied Biosystems, Foster City, CA, USA), a TaqMan PCR kit, and an Applied Biosystems 7500 sequence detection system. To quantify lncRNAs and mRNAs, total RNA was converted to cDNA using oligo(dT) and random primers (Takara, Japan), followed by PCR using SYBR Green (Takara) and gene-specific primers. All of the reactions were run in triplicate. The expression levels of miRNAs were normalized to U6 small nuclear RNA (snRNA), while those of lncRNAs and mRNAs were normalized to GAPDH mRNA using the 2−ΔΔCt method. The primers used for quantitative real-time PCR were provided in Table S1.
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6

Hepatic Gene Expression Analysis

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Hepatic RNA from three groups (n = 10 in each group) was extracted using an RNeasy Mini Kit (Qiagen, Germantown, MD, United States), and cDNA was synthesized using oligo-dT and random primers (TaKaRa, Shiga, Japan). Quantitative real time-PCR (qPCR) was performed using a SYBR green real-time PCR master mix (Applied Biosystems, Foster City, CA, United States) on the ABI 7900 detection system (Applied Biosystems, Foster City, CA, United States). Gapdh was used as the internal control. Primers are listed in Table 2.
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7

Placental RNA Extraction and qRT-PCR Analysis

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Placental RNA was extracted using TRIzol Reagent (Invitrogen Life Technologies, Carlsbad, CA, USA) according to the manufacturer's protocol. DNA contamination was wiped out by DNase I digestion (AM2222, Thermo Fisher Scientific). Total RNA was reverse-transcribed from 1 μg of RNA using oligo dT and random primers (TaKaRa, Japan) and amplified by SYBR® Premix Ex Taq™ (TaKaRa, Japan) in the ABI Prism 7900HT (Applied Biosystems, Foster City, CA). All threshold cycle (Ct) values of each sample were utilized in the post-PCR data analysis. GAPDH is our internal control, and gene expression levels were normalized against GAPDH. Full list of primer sequences is shown in Supplemental .
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