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11 protocols using spe cartridge

1

Melatonin Extraction and Quantification

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Melatonin and melatonin-derivatives extraction was done through a modification of the methods described by Riga et al [28 (link)] and Li et al. [33 (link)]. Briefly, 1 g of frozen leaves were ground into powder with liquid nitrogen and homogenized in a mix of acetone:methanol:water (89:10:1) containing 2.5 mM trichloroacetic acid. The homogenates were shaken for 30 min at RT and centrifuged at 10,000× g at 4 °C for 15 min. The supernatants were centrifuged again and subsequently filtered with Whatman filter paper (0.4 µm). The filtered supernatants were purified using an SPE cartridge (Waters, Milford, MA, USA). The cartridge was then washed with 10 mL 5% methanol, and melatonin was finally eluted at a natural flow rate with 2 mL 80% methanol. The extracts were subsequently filtered through a Whatman filter paper (0.20 μm) before UHPLC-ESI-MS/MS analysis. Melatonin, 3OH-Mel, AFMK and AMK determination and quantification was analyzed using a UHPLC-ESI-MS/MS (UHPLC-1290 Series and a 6460 QqQ-MS/MS; Agilent Technologies, Waldbronn, Germany) with an Agilent SB-C18 column (4.6 × 50 mm; 1.8 μm; Agilent Technologies, Santa Clara, CA, USA). The data reported are the mean ± SE of 3 biological replicates per treatment.
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2

Quantification of Methylglyoxal and Pyruvate

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MG and pyruvate levels were measured by converting these metabolites into quinoxaline derivatives using 1,2-diaminobenzene (Merck) and methods already detailed [9 (link), 26 (link)]. For utilization in enzymatic studies and intracellular quantification, MG from a commercial 40% solution was repurified by vacuum distillation (Sigma, USA) to eliminate polymerized MG and impurities [27 (link)]. The distilled MG concentration was calculated to be 0.5565 M, which was stoichiometrically confirmed by 2-methylquinoxaline (Sigma) using a high-performance liquid chromatography (HPLC) system. Analytical grade pyruvate (Sigma) was purchased and used without further purification. Quinoxaline derivatives of MG and pyruvate (i.e., 2-methylquinoxaline and 2-hydroxy-3-methylquinoxaline) were obtained using a solid-phase extraction (SPE) cartridge (Waters) containing a C18 resin. The resulting derivatives were separated using an Agilent 1200 series HPLC system with a Zorbax Eclipse XDB-C18 analytic column (Agilent, 150 × 4.6 mm) at a wavelength of 336 nm with an internal standard 5-methylquinoxaline (Sigma).
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3

Fatty Acid Hydroperoxide Analysis

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GPX conversion of fatty acid derived hydroperoxides was performed as mentioned before. The reaction was stopped by addition of 1 mL ice-cold MeOH (fisher chemical; 10653963) and samples were directly processed for measurement. Therefore, solid phase extraction was performed after initial acidification (Milli-Q water, pH 3.5) using SPE cartridges (Waters, WAT043395). Samples were washed with 6 mL of Milli-Q water and eluted with 6 mL of methyl formate (fisher chemical; 414340025) into a glass vial. Samples were evaporated until dryness with a moderate stream of nitrogen and resuspended in 100 μL of an equal mixture of MeOH and water (VWR Chemicals, 83645320). Monohydroxylated fatty acids were measured by ultra-high-performance liquid chromatography (UPLC) tandem mass spectrometry in line with previously published methodology [46 (link)].
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4

Serum Sample Cleanup by C18 SPE

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200 μL of delipidated serum samples [11 (link)] were diluted 5 times in 0.1% TFA prior to C18 solid phase extraction (SPE). The SPE cartridges (PID# WAT020515, Waters) were washed stepwise in 90% ACN and finally equilibrated 3 times in 0.1% TFA before the loading of diluted serum. Then, the SPE cartridge was washed three times with 0.1% TFA to remove binding of non-specific proteins on the C18 reverse phase and elution carried out with 70% ACN, 0.1% TFA.
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5

Determination of PFAS in Environmental Samples

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Standard reference material (SRM) solutions made from inorganic fluorine “fluoride standard solution” (nr. 1.19814.0500) and “anion multielement standard I” (nr. 1.11437.0500) were purchased from Merck KGaA, Darmstadt, Germany. PFOA in solid form was bought from Aldrich, now part of Sigma-Aldrich (St. Lousi, MO, United States). Standard solutions of PFAS were purchased from Wellington Laboratories (Guelph, Canada). Potassium and magnesium salts (KCl, reagent grade; MgCl2 x 6 H2O, reagent grade) were purchased from Scharlau (Barcelona, Spain). Sodium chloride (NaCl) was purchased from VWR Chemicals (Radnor, PA, US). Calcium chloride (CaCl2 x 2 H2O) was purchased from Merck.
Methanol (MeOH) was purchased from Fisher Scientific (Waltham, MA, United States). Water for sample preparation and the CIC (absorber, rinsing, eluent solutions) was purified with a MilliQ system (18.2 MΩ resistance). Argon and oxygen for the CIC were purchased from AGA (Lidingö, Sweden). Methyl tert-butyl ether (MTBE) and tetrabutyl-ammonium sulfate (TBA), used for IPE, were purchased from Sigma-Aldrich. SPE cartridges (6 mL, 150 mg sorbent, 30-μm particle size) with WAX sorbent were purchased from Waters Corporation, Milford, MA, US. GF/F glass fiber filters (150 mm, 0.7 μm) were purchased from Whatman (Chicago, IL, US).
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6

Protein Sample Preparation for MS

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Unless otherwise stated, lyophilized samples were resuspended in 8 M Urea in 50 mM ammonium bicarbonate, reduced with 5 mM TCEP (Sigma-Aldrich) for 30 min at 37 °C on a thermomixer (Eppendorf) and subsequently alkylated with 10 mM IAA (Sigma) at room temperature in the dark. Urea was first diluted to a concentration of 5.5 M and Lys-C (Wako) at a 1:100 wt/wt ratio was added for 2.5–3 h at 37 °C. Subsequently, urea was diluted to 1 M and samples were further digested by addition of trypsin (Promega) at 1:50 wt/wt ratio overnight at 37 °C. Digested samples were acidified by addition of formic acid and purified using either SPE cartridges (Waters) or microspin columns (The Nest Group). Eluates were dried, resuspended in acetonitrile 2–5% and formic acid 0.1%, typically with addition of iRT peptides (Biognosys), sonicated and centrifuged for 5–10 min at 10,000 g before MS injection.
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7

Radiosynthesis of [18F]Fluoride Labeling

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The cyclotron parameters used in the production of carrier-added [18F]F2 are summarized in Supplemental Table 1. The target gas ([18O]O2 > 98%) used for the first bombardment on the cyclotron is obtained from Campro Scientific (Berlin, Germany). The synthesis is carried out using a custom-build synthesis platform (see Supplemental Figs. 1 and 2). An overall synthesis flowchart can be found in Supplemental Fig. 3. The precursor 2 for radiolabeling is obtained from ABX advanced biochemical compounds (Radeberg, Germany), standard reagents are obtained from Sigma-Aldrich, sterile solutions from the Aarhus University Hospital Pharmacy (Aarhus, Denmark), SPE cartridges and sterile filters from Waters, and the high-performance liquid chromatography (HPLC) column is obtained from Phenomenex. The radiosynthesis is described in detail in the Supplemental Data. Following completed deprotection of [18F]3 (see Scheme 1), the crude product is purified by semi-preparative radio-HPLC using a Spherisorb ODS column (250 × 10 mm) and sodium dihydrogen phosphate buffer (70 mm, sterile) as eluent at a flow rate of 3 ml/min. [18F]1 elutes at 11–13 min and is collected directly into the final sterile product vial via a Millipore-GS 0.22 μm sterilizing filter.
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8

Activation and Preparation of SPE Cartridges

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All reagents were commercially acquired and utilized without further purification unless otherwise stated. 4,7,13,16,21,24-Hexaoxa-1,10-diazabicyclo [8.8.8] hexacosane (K222, 98.0 %) was purchased from ABX (Germany). Anhydrous acetonitrile and potassium carbonate (K2CO3) were purchased from Sigma (America). All SPE cartridges were purchased from Waters Corporation (USA). To activate Sep-Pak QMA, Sep-Pak C18, and Sep-Pak PS-2, we flushed them with 5 mL absolute ethanol followed by 10 mL water.
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9

High Purity Standards for Analytical Methods

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High purity standards used for method development and analytical purposes were purchased from Oasis HLB on-line solid phase extraction (SPE) cartridges (10 x 1 mm, 30-µm particle size, 2.5 mg) were purchased from Waters Corporation (Milford, MA, USA), while Hysphere Resin GP on-line SPE cartridges (10 x 2 mm, 5-15-µm particle size, 13 mg) were purchased from Spark Holland (Emmen, The Netherlands).
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10

Isoprostane Quantification Protocol

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Isoprostane 8-iso-PGF 2α will be referred to as "isoprostane" throughout the article. The serum samples were extracted after acidification. SPE cartridges (Waters) were activated with 5 ml of methanol and prewashed with 5 ml distilled water. The serum was applied to the columns and rinsed with 5 ml water, followed by 5 ml hexane. The 8-isoprostane was eluted with 5 ml ethyl acetate containing 1% methanol. The samples were dried with a Savant Speed-Vacuum concentrator and dissolved in 100 μl enzyme immunoassay buffer. Isoprostane levels were measured by enzyme immunoassay kit (Cayman, Ann Arbor, MI). The detection limit is 2.7 pg/ml, and sensitivity was 10 pg/ml. The intra-assay and interassay coefficients of variation have been determined as 12.4% and 15.6%.
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