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5 protocols using pro caspase 7

1

Pevonedistat Synthesis and Reagent Details

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Pevonedistat was synthesized by Millennium Pharmaceuticals, Inc. The following reagents were purchased from their respective companies: recombinant rat TNF-α (Peprotech, Rocky Hill, NJ, USA); caspase inhibitors Z-VAD-FMK and Z-IETD-FMK (R&D Systems, Minneapolis, MN, USA); Necrostatin-1 (Sigma-Aldrich, St. Louis, MO, USA); and Epoxomicin (Sigma-Aldrich). Antisera were purchased from the following companies: β-Actin, cleaved caspase-3, cleaved caspase-8 (p18), cFLIP, cullin-3, IκBα, phospho-IκBα, NEDD8, PARP, pro-caspase-3, pro-caspase-6, pro-caspase-7, pro-caspase-8 (p10), pro-caspase-9 (Cell Signaling, Danvers, MA, USA); MLKL (Millipore, Billerica, MA, USA); CDT1 (Santa Cruz Biotechnology, Dallas, TX, USA); and BID (eBioscience, San Diego, CA, USA). Complete antisera details are provided in Supplementary Information.
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2

Investigating Cellular Responses to Oxidative Stress

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The following compounds were used in this study: DATS (purity > 97%; Shenzhen Minn Bolin Biotechnology Co., Ltd., Shenzhen, China), iodoacetamide (IAM; Nanjing Dingguo Changsheng Biotechnology Co., Ltd., Nanjing, China), and mitomycin (Sigma, St Louis, MO, USA). They were dissolved in dimethylsulfoxide (DMSO) for experiments. DMSO at a concentration of 0.02% (w/v) was set as a vehicle control throughout the studies. Analytical grade 30% hydrogen peroxide (H2O2; Sinopharm Chemical Reagent Co., Ltd., Shanghai, China) was diluted with deionized water to indicated concentrations for experiments. The following primary antibodies were used in this study: α-SMA, α1(I) procollagen, and fibronectin (Epitomics, San Francisco, CA, USA); TGF-βRI, TGF-βRII, PDGF-βR, EGF-R, and Bcl-2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA); cyclin A, cyclin B1, CDK1, CDK2, Bax, pro-caspase-9, cleaved-caspase-9, pro-caspase-8, cleaved-caspase-8, pro-caspase-7, cleaved-caspase-7, pro-caspase-3, cleaved-caspase-3, full-length PARP-1, cleaved-PARP-1, and β-Actin (Cell Signaling Technology, Danvers, MA, USA).
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3

Western Blot Analysis of Cellular Signaling Pathways

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Cells were washed twice with PBS and lysed. The lysate samples were then centrifuged at 14000 × rpm for 20 min at 4 °C. Supernatants were collected, and equal amounts of protein (50 μg per lane) were subjected to electrophoresis on 10% (W/V) SDS-polyacrylamide gels and then transferred to polyvinylidenedifluoride (PVDF) membranes. The membranes were blocked with 5% nonfat dry milk in PBST (PBS and 0.05% Tween 20) for 1 h, washed twice with 0.1% PBST, and incubated with primary antibodies for ATF-4, CHOP, pro-caspase-7, cleaved caspase-7 (Cell Signaling Technologies, MA, USA), Grp-78, pro-caspase-3, cleaved caspase-3, Bcl-2, Bax (Santa Cruz, CA, USA), phospho-AMPK, AMPK, phospho-eukaryotic initiation factor 2α (eIF2α), and eIF-2α (Abcam, Cambridge, MA, USA) for 1 h. The membranes were then washed with 0.1% PBST and incubated with secondary antibodies that were conjugated to horseradish peroxidase for 45 min. Antibody-reactive bands were revealed using enhanced chemiluminescence reagents (Amersham Biosciences, Sweden) and exposed to Fuji radiographic film. The protein expression of β-actin was as an internal control. The protein expressions were quantified by densitometry and analyzed by ImageQant TL 7.0 software.
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4

Antibodies for Cellular Signaling Pathway Analysis

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Primary antibodies against PKM2 (#4053S), PKM1 (#7067), poly (ADP-ribose) polymerase (PARP) (#9542), cleaved-PARP (#5625S), pro-caspase-7 (#9492), pro-caspase-3 (#9662), Cyclin-B1 (#4138), cell division cycle protein 2 homolog (Cdc2) (#77055), p-Cdc2 (#9111S), AMP-activated protein kinase (AMPK)-α (#2532), p-AMPKα (#2535), phosphatase and tensin homolog (PTEN) (#9559S), p-PTEN (#9551), Akt (#9272), p-Akt (#9271S), p-mTOR (#2971S), mTOR (#2972), ribosomal protein S6 kinase beta-1 (p70S6K) (#9202S), and p-p70S6K (#9206S) were purchased from Cell Signaling (Beverly, MA, USA). Primary antibodies against B-cell lymphoma 2 (Bcl-2) (sc-783), c-Myc (sc-40), Bcl-2-associated X (Bax) (sc-7480), GLUT1 (sc-7903), MCT4 (sc-376465), and β-actin (sc-47778) were purchased from Santa Cruz Biotechnology (Santa Cruz, CA, USA). Purchased primary antibodies against LC3B (ab51520), p62 (ab56416), and β-catenin (ab6302) were from Abcam (Abcam, Cambridge, UK). Beclin-1 (NB500-249) was purchased from Novus Biologicals (Littleton, CO, USA). Horseradish peroxidase (HRP)-conjugated secondary antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, Dallas, TX, USA).
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5

Apoptosis-related Protein Expression

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Propidium iodide, dimethyl sulfoxide were purchased from Sigma-Aldrich (Sigma, St. Louis, MO, USA). Antibodies against Akt, phospho-Akt, p53, procaspase-3, cleaved caspase-3, procaspase-7, cleaved caspase-7, Procaspase-9, cleaved caspase-9, Bcl-xL, Bcl-2, Puma, procaspase-8, Fas, DR5, FADD, Cyclin D1 and CDK4 were purchased from Cell Signaling Technology (Beverly, MA, USA). Antibodies against Erk, phospho-Erk, Bad, Bax and GAPDH were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA).
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