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80 protocols using polyvinylidene di uoride membrane

1

Western blot analysis of tight junction proteins

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The prepared mucosal layers were extracted in radioimmunoprecipitation buffer containing 1 mmol/L phenylmethanesulfonyl uoride, 10 mg/mL leupeptin and 10 mg/mL aprotinin. The extract was centrifuged at 12,000 g for 20 minutes. Samples containing equal amounts of protein (20 mg) were separated by 6% sodium dodecyl sulfate polyacrylamide gel electrophoresis and electroblotted onto polyvinylidene di uoride membranes (Millipore, USA). Blots were probed with mouse antibodies against occludin (dilution 1:5000; Invitrogen, USA), rabbit antibodies against claudin-1, (dilution 1:1000; Invitrogen, USA), rabbit antibodies against claudin-2 (dilution 1:1000; Invitrogen), mouse antibodies against claudin-5 (dilution 1: 200; Invitrogen) and with rabbit anti-β-actin antibody (1: 5000, Cell Signaling, USA) or mouse anti-β-actin antibody (1:5000, Cell Signaling) as a loading control. Experiments were carried out in triplicate and β-actin protein levels were analyzed as a control for equal protein loading.
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2

Western Blot Protein Extraction and Detection

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Cells were washed with ice-cold PBS twice and disrupted with lysis buffer (20 mM Tris-HCl, pH 7.5, 2 mM EDTA, 100 mM NaCl, 5 mM MgCl 2 , 1% (v/v) Triton X-100, 5 mM NaF, 10% (v/v) glycerol, 0.5 (v/v) 2-mercaptoethanol, 0.1 mM Na 3 VO 4 and protease inhibitors). Cell lysate was centrifuged at 12000 ×g for 5 min at 4 °C and supernatant fractions were collected. Protein extracts (30 to 50 μg) were separated by SDS-PAGE and transferred to polyvinylidene di uoride membranes (Millipore, Billerica, MA) in 20 mM Tris-HCl (pH 8.0), containing 150 mM glycine and 20% (v/v) methanol.
Membranes were blocked with 5% non-fat milk in TBS containing 0.05% Tween-20 (TBS-T) and incubated with their speci c primary antibodies 4 °C overnight. Blots were washed 3 times in TBS-T buffer, followed by incubation with an appropriate HRP-conjugated secondary antibody for 1 h at room temperature for hybridization. The blots were visualized using the enhanced chemiluminescence (ECL) reagent (Millipore, Billerica, MA).
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Protein Isolation and Western Blot Analysis

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Total protein was isolated with RIPA buffer (Beyotime) and determined with a BCA protein assay kit (Beyotime). Then the extracts were separated by sodium dodecyl sulfonate-polyacrylamide gel (Solarbio) and transferred to polyvinylidene di uoride membranes (Millipore, Billerica, MA, USA). Next, the membranes were blocked in 5% slim milk for 1 h at room temperature and incubated overnight at 4°C with primary antibodies: Ki67 (ab16667; 1:1000; Abcam), Twist1 (ab49254; 1:500; Abcam), E-cadherin (ab231303; 1:1000; Abcam), LIPH (ab192615; 1:5000; Abcam), GALNT7 (ab113743; 1:1000; Abcam), PSD3 (ab62194; 1:2000; Abcam), ITGA2 (ab133557; 1:20000; Abcam) or GAPDH (ab181602; 1:10000; Abcam). Afterward, the samples were subjected to secondary antibody (ab205719; 1:10000; Abcam) for 2 h at room temperature. At last, the protein bands were determined using ECL western blot kit (Beyotime) and analyzed by ImageJ software.
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Protein Expression Analysis by Western Blot

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Total protein was isolated with RIPA buffer (Beyotime) and determined with a BCA protein assay kit (Beyotime). Then the extracts were separated by sodium dodecyl sulfonate-polyacrylamide gel (Solarbio) and transferred to polyvinylidene di uoride membranes (Millipore, Billerica, MA, USA). Next, the membranes were maintained in 5% slim milk for 1 h and incubated overnight at 4 °C with primary antibodies: Ki67 (ab16667;
Abcam), Twist1 (ab49254; Abcam), E-cadherin (ab231303; Abcam), LIPH (ab192615; Abcam), GALNT7
(ab113743; Abcam), PSD3 (ab62194; Abcam), ITGA2 (ab133557; Abcam) or GAPDH (ab181602; Abcam).
Afterward, the samples were subjected to secondary antibody (ab205719; Abcam) for 2 h at room temperature. At last, the protein bands were determined using ECL western blot kit (Beyotime).
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Western Blot Analysis of Cellular Proteins

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Preparation of tissue and cell lysates was previously reported [44, (link)47, 49] (link). Lysate samples were electrotransferred onto polyvinylidene di uoride membranes (Millipore, Darmstadt, Germany). Primary antibodies for HMGB1 (1:1000), E-cadherin (1:1000), Yap (1:1000), phosphorylated (p)-Yap (1:1000), SPC (1:1000), T1α (podoplanin; 1:1000), Sirt1 (1:1000), p-Sirt1 (1:1000), p53 (1:1000) β-actin (1:1000), and αtubulin (1:1000) were obtained from Cell Signaling (Danvers, MA, USA) or Abcam (USA). Anti-rabbit (1:2000) horseradish peroxidase (HRP)-conjugated secondary antibodies were obtained from Chemicon International (MA, USA) and Merck Millipore (MA, USA). An HRP-labeled secondary antibody was incubated and washed with TBST after blocking. Enhanced chemiluminescence Western blotting reagents were used, after which images were taken with a ChemiDoc MP imager (Bio-Rad, Hercules, CA, USA). Quantitative data were obtained using Image-Pro vers. 4 (Media Cybernetics, MD, USA) for Windows. All data were adjusted to the control (multiples of change of the control) as previously reported [50, (link)51] (link).
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Protein Extraction and Western Blot

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Cells were lysed with the RIPA buffer (Beyotime, China). Protein concentration was quanti ed using the bicinchoninic acid method ( Beyotime, China). Equal amounts of proteins were separated by 10% SDS-PAGE, electroblotted onto polyvinylidene di uoride membranes (Millipore, USA). After incubation in 5% nonfat dry milk, the proteins were probed with primary antibodies, incubated with a secondary antibody, and visualized by the eyoECL Plus Kit (Beyotime, China).
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7

Quantifying Protein Expression in X-Ray Irradiated Cells

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The expression of caspase-3, cleaved caspase-3, E-cadherin, N-cadherin, Vimentin, Bax, Bcl-2 and btubulin in samples and in cells irradiated by 6 MV x-ray in different groups were detected by WB. Total proteins from cells were centrifuged for 20 min at 13,000´g. Proteins were then shifted to polyvinylidene di uoride membranes (Millipore, Shanghai, China), closed with 5% non-fat milk in tris-buffered saline with Tween (TBST, 20 mM Tris-HCl, 150 mM NaCl, 0.05% Tween 20, pH 8.0) and buffered for 1 h. The target proteins were detected with different antibodies at 4°C overnight, and washed 4 times with TBST for 30 min. Then, the secondary antibodies were bioconjugated with horseradish peroxidase at a dilution (1:10000) for 1 h at room temperature and washed 4 times with TBST. The β-tubulin was used as the internal reference. The enhanced chemiluminescence (ECL) method was applied for development, and cassette exposure was used for development and xation. Bands were visualised using a UVP detection system and band intensity that was quanti ed using LAB WORKS 4.6. All experimental results were repeated 3 times.
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8

Western Blot Analysis of Brain Proteins

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Brain tissues from the prefrontal cortex were dissected and frozen in dry ice. Equal amounts of total protein were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred to polyvinylidene di uoride membranes(Millipore, Bedford, MA, USA), and membranes were blocked with 5% nonfat mile in Tris-buffered saline containing 0.1% Tween20 for 2 h. Membranes were then incubated overnight at 4℃ with -spectrin/ -fodrin (Abcam, Cambridge, MA, USA), TRPC6 and cleaved-caspase-3 (Cell signaling technology, Danvers, MA, USA), followed by horse radish peroxidase-conjugated IgG. Labeled proteins were detected with the chemiDocXRS+ chemiluminescence imaging system. Protein bands were quanti ed by persons blinded to the treatments using image lab image acquisition and analysis software.
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9

Western Blot Protein Analysis

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Cells were washed with phosphate-buffered saline (PBS) and dissolved in a lysis buffer containing a mixture of protease inhibitors, and the total protein was obtained. Proteins were electrophoresed with 10% SDS-PAGE gels and transferred to the polyvinylidene di uoride membranes (Millipore, Bedford, MA, USA). Primary antibodies were incubated at 4°C overnight. Membrane proteins were incubated with anti-rabbit IgG at 37 °C. Immunodetection was acquired with the ECL Western blotting kit. All bands were analyzed by LabWorks (TM ver4.6, UVP, BioImaging Systems, NY, USA).
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10

Exosome Isolation and Protein Analysis

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Cell pellets or puri ed exosomes were harvested and lysed with RIPA lysis buffer (Beyotime) supplemented with the protease inhibitor phenylmethylsulfonyl uoride (PMSF) (1 mM; Beyotime) and a phosphatase inhibitor (Beyotime). Cell lysates and exosomes were heat denatured at 100℃ incubator for 10 min, separated by 10% or 8% SDS-PAGE and transferred to polyvinylidene di uoride membranes (Millipore). The proteins were identi ed by incubation with the appropriate primary antibody and then with an HRP-conjugated secondary antibody (Pierce). Immunoreactions were visualized with ECL reagent (Pierce), and images were acquired using a ChemiDoc Touch Imaging System (Bio-Rad) and analyzed with Image Lab software. The densities of the corresponding bands were quanti ed using ImageJ software.
Cell viability assay SK-OV-3, HCT116, HEp-2 and MDA-MB-231 cells were seeded into 96-well plates at a density of 1 × 10 4 cells per well one day before exposure to exosomes. Cells in triplicate wells were mock treated (Mock) or incubated with 1 µg of puri ed exosomes produced by HEK-293 cells transfected with plasmids encoding either miR-HER2-E1 or the nontargeting (NT) miRNA. After 72 h of incubation, the relative cell viability was determined by a CCK8 assay according to the manufacturer's protocol.
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