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Novex tris glycine precast gels

Manufactured by Thermo Fisher Scientific

Novex Tris–glycine precast gels are laboratory products used for protein separation and analysis. They are pre-cast polyacrylamide gel electrophoresis (PAGE) gels that utilize a Tris-glycine buffer system. These gels are designed to provide consistent and reliable results for SDS-PAGE applications.

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6 protocols using novex tris glycine precast gels

1

Western Blot Analysis of Macrohistone

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For Western blot analysis, cell nuclei were prepared by cell disruption in CSK buffer (100 mM NaCl, 300 mM Sucrose, 10 mM Tris pH 7.5, 3 mM MgCl2, 1 mM EGTA, 1.2 mM PMSF, 0.5% Triton X-100), and centrifugation for 10 min at 4000 rpm. Nuclei were resuspended in 1× NuPAGE LDS Sample buffer (Invitrogen, NP0007) with DTT (12.5 mM), sonicated, heated for 10 min at 72°C and loaded on 4–12% gradient Novex Tris–glycine precast gels (Invitrogen, NP0315). After separation, the proteins were transferred to PVDF membranes and probed with primary antibodies against macroH2A1 at 1:1000 (Active Motif 39594) detected by an antirabbit-HRP antibody at 1:1000 (Roth 4750.1) according to the manufacturer's protocoles. Expression of the BAP-tagged proteins was detected with an HRP-conjugated anti-polyHistidine antibody at 1:4000 (Sigma A7058) and biotinylated proteins were visualized with an HRP-conjugated streptavidin at 1:1000 (Sigma S2438). For streptavidin-HRP, an additional washing step with PBS/Tween-20 0.1% and NaCl 500 mM was performed.
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2

Protein Extraction and Western Blot Analysis

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Brain tissue were washed in phosphate-buffered saline once and sonicated in lysis buffer (20 mM Tris pH 7.6, 100 mM NaCl, 1% Nonidet P-40, 0.1% SDS, 1% deoxycholic acid, 10% glycerol, 1 mM EDTA, 1 mM NaVO3, 50 mM NaF, Protease Inhibitor Cocktail Set I from Calbiochem). Soluble protein was then obtained by centrifugation at 13,000 × g at 4°C for 15 minutes. Bicinchoninic acid (BCA) protein assay (Pierce) was used to measure total protein concentration. Equal amounts of lysate (20 μg protein/lane) were loaded to SDS-polyacrylamide electrophoresis on Novex Trisglycine precast gels (Invitrogen), and separated proteins were then electrotransferred to polyvinylidene fluoride (PVDF) membranes (Millipore). SuperSignal West Pico Chemiluminescent Substrate system (Thermo Scientific) was applied to visualize different proteins by reacting to various antibodies. The band intensity was analyzed using Scion Image software (Scion). Antibodies used for Western blot included anti-tumor transforming growth factor beta1 (TGF-β1) polyclonal antibody (Santa Cruz, SC-146); anti-nuclear factor-kappa B (NFkB) antibody (Abcam, ab7970) and anti-actin (1:5000, Santa Cruz Biotechnology).
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3

Comprehensive Protein Expression Analysis

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Antibodies against cdk6, cdk2, cdk4, cyclin B1, cyclin D1, cyclin D2, cyclin E2, p27, p21, PARP, Bcl-2, Bax, Bcl-XL, p-AMPK, AMPK, p-ACC, ACC, p-mTOR, mTOR, p-S6, S6, p62, LC3AB and caspase-3 were purchased from Cell Signaling Technology (Beverly, MA). Anti-mouse and anti-rabbit secondary antibody horseradish per-oxidase conjugate was obtained from Amersham Pharmacia Life Sciences. The Bio-Rad DC Protein Assay Kit was purchased from Bio-Rad, CA. Novex precast Tris-Glycine gels were obtained from Invitrogen. The APO-DIRECT™ was purchased from BD biosciences. AMPK kinase activity was assay was performed by AMPK kinase activity kit which was purchased from CycLex Co., Ltd. (Cat#CY-1182).
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4

Protein Expression Analysis Protocol

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Antibodies against cdk2, cdk4, cdk6, cyclin B1, cyclin D1, cyclin D2, cyclin E, p27, p21, PSA, Poly (ADP-ribose) polymerase (PARP), Bcl-2, Bax, Bak, Bcl-XL and AR were obtained from Cell Signaling Technology (Beverly, MA). Anti-mouse and anti-rabbit secondary antibody horseradish per-oxidase conjugate was obtained from Amersham Pharmacia Life Sciences. The Bio-Rad DC Protein Assay Kit was purchased from Bio-Rad, CA. Novex precast Tris-Glycine gels were obtained from Invitrogen. The annexin-V-FLUOS Staining Kit was purchased from Roche.
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5

Western Blot Analysis of Cell Cycle Regulators

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Samples were directly lysed by addition of Laemmli buffer. Whole cell lysates were loaded onto 4–20% Tris-Glycine Novex precast gels (ThermoFisher) followed by transfer to PVDF membranes. After protein transfer, membranes were briefly washed in MeOH and then dried between sheets of filter paper. When completely dry, primary antibody diluted in 5% milk in TBS was added and membranes were incubated overnight at 4 °C with rocking. Membranes were washed three times in TBS+0.05%TritonX-100 (TBS/T) and anti-mouse or anti-rabbit HRP-conjugated secondary antibodies (CST) were diluted 1:2,000 in 5% milk in TBS and incubated with membranes for 1 h at RT, with rocking. Membranes were washed three times in TBS/T and visualized using Pierce ECL Western Blotting Substrate (ThermoScientific). All blots were scanned on the Azure c300 imaging system.
Antibodies used in this study for Western blotting are p21 (BD, ms, 556430, 1:1,000), Skp2 (Proteintech 15010-1-AP, 1:500), Cdt2 (Bethyl A300-948A, 1:250), p53 (CST 2527, 1:2,000) and GAPDH (Novus NB300-221, 1:5,000).
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6

Wee1 Knockdown in hTert-RPE1 Cells

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hTert-RPE1 Cyclin B1–mVenus cells were reverse transfected in 24-well plates with 20 nM NTC or Wee1 siRNA using 1 μl of Lipofectamine RNAiMAX (Thermo Fisher Scientific) diluted in 100 µl/well OPTIMEM. Cells were plated on top of the transfection mix in 400 µl of DMEM (with 10% FBS and 1% P/S) and left for 6 h. Cells were then washed in 1× PBS lysed in 50 µl of 1× Laemmli buffer and cell lysates were loaded and run into 4–20% Tris-Glycine Novex pre-cast gels (Thermo Fisher Scientific). Separated proteins were transferred to PVDF-FL membranes which were then blocked in blocking buffer (5% milk in TBS with 10% glycerol) for 1 h at room temperature. Antibodies raised against Wee1 (CST 4936, 1:500), Myt1 (CST 4282, 1:1000), pY15-CDK (ab133463, 1:1000), β-actin (CST 3700, 1:1000) and vinculin (CST 13901, 1:2000) were diluted in blocking buffer and incubated with membranes overnight at 4°C. The next day, membranes were washed three times for 10 min each time in TBS with 0.05% Triton X-100 (TBS/T) and then incubated for 1 h at room temperature in anti-rabbit-IgG secondary antibody conjugated to HRP diluted 1:2000 in blocking buffer. Membranes were washed three times for 10 min each time in TBS/T and developed using Bio-Rad ECL substrate. Blots were imaged on an Amersham Imager 600. Uncropped western blots are shown in Fig. S8.
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