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Omega mars data analysis software package

Manufactured by BMG Labtech
Sourced in Germany

The Omega MARS Data analysis software package is a tool designed to analyze data generated by BMG LABTECH's microplate readers. It provides users with the ability to process, visualize, and interpret the data collected from various experimental setups.

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8 protocols using omega mars data analysis software package

1

Lipid Droplet Uptake Assay in 3T3-L1 and HuH7 Cells

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3T3-L1 cells were grown and differentiated in 12-well tissue culture plates. Cells were treated for 1 or 3 days with the indicated substances (BBR: 3.70 µg/mL, herbal extracts: 10 mg/L) post-differentiation or left untreated (control cells). Cells were subsequently pulse labeled with LD540 (0.5 µg/mL) for 20 sec, washed once with medium and further incubated in LD540-free medium for 30 min. After the transport period, cells were washed with PBS twice and then lysed in 0.05 M NaOH. A volume of 300 µL of the lysate was transferred into a 96-well plate, and total fluorescence was quantitated with a microplate reader (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using the Omega MARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). The LD540 uptake was normalized to untreated cells grown under the same conditions. The same experimental procedure was used for studying LD540 uptake in HuH7 cells, except for the differentiation step.
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2

In Vitro Cytotoxicity Evaluation of Test Extracts

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Toxic effects of test extracts and flavanones were evaluated using a resazurin-based in vitro toxicology assay kit according to the manufacturer’s instructions. Briefly, cells were seeded into black 96‐well plates at a density of 2 × 104 (IPEC-J2), 1.5 × 105 (Caco-2) or 105 (THP-1) cells per well, grown to 90% confluency, and incubated with test substances in growth medium for 20 min (IPEC-J2 and Caco-2) or 24 h (THP-1) at 37 °C. Then, medium was aspirated, and cells were incubated with 10% resazurin in growth medium for 1.5 h. The amount of resorufin was measured using a microplate reader in fluorescence mode (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using the Omega MARS Data analysis software package (BMG LABTECH). Cell viability was normalized to untreated cells (control) grown under the same conditions.
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3

Nile Red Assay for Lipid Accumulation

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Neutral lipid accumulation in 3T3-L1 cells was assessed by the lipophilic dye Nile red (Thermo Fisher Scientific, Waltham, Massachusetts). Cells were treated with the indicated substances (BBR: 3.70 µg/mL, herbal extracts: 10 mg/L) for different time periods, washed with PBS and fixed with 4% paraformaldehyde for 15 min. The cells were washed three times with PBS and were subsequently stained with 10 µg/mL Nile red solution for 15 min. Stained cells were rinsed twice with PBS, and LDs were imaged on an Olympus IX-81 inverted microscope (Olympus, Tokyo, Japan), equipped with an IX2-DSU confocal unit. Nile red quantitation was performed using a microplate reader (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using the Omega MARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). Nile red staining was normalized to untreated cells grown under the same conditions.
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4

Resazurin-Based Cell Viability Assay

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Cytotoxic effects of compounds used for the cell layer integrity study were evaluated by using a resazurin-based in vitro toxicology assay (Sigma-Aldrich; Schnelldorf, Germany), according to the manufacturer’s instructions. Briefly, cells were seeded into 96-well plates (45,000 cells per well), grown to 90% confluence, and incubated with the test substances for 2 h at 37 °C. The cells were washed and incubated with 10% resazurin in growth medium for 2 h. Subsequently, the amount of the reduced form of resazurin (resorufin) was determined with a microplate reader in fluorescence mode (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data analysis was done by OmegaMARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). Untreated cells grown under the same conditions were used for normalization of cell viability. Each test substance was measured in triplicate.
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5

Resazurin-Based Cell Viability Assay

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Cell viability was evaluated using a resazurin-based in vitro toxicology assay according to the manufacturer’s protocol. Briefly, cells were seeded in 96-well plates at 5 × 104 cells per well, grown to 80% confluence and incubated with the indicated test substances at 37 °C for 2 h. Subsequently, the cells were washed and incubated with 10% resazurin in cell culture medium at 37 °C for 2 h. The level of the reduced form of resazurin (resorufin) was then determined using a microplate reader in fluorescence mode (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using the OmegaMARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). Cell viability was normalized to untreated cells grown under the same conditions. Each test substance was measured at least in quadruplicate.
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6

Cytotoxicity Evaluation of Herbal Extracts

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The cytotoxic effects of herbal extracts used in this study were evaluated by using a resazurin-based in vitro toxicology assay (Sigma-Aldrich, Schnelldorf, Germany), according to the manufacturer’s instructions. Briefly, HuH7 and undifferentiated 3T3-L1 cells were seeded into 96-well plates (45,000 cells/well), grown to 90% confluency, and incubated with the test substances (BBR: 3.70 µg/mL; herbal extracts: 10 mg/L) for 1, 3 and 5 days at 37 °C. Subsequently, the cells were washed with medium and incubated with a medium containing 10% resazurin for 2 h. The concentrations of the reduced form of resazurin (resorufin) were then determined using a microplate reader in fluorescence mode (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using the Omega MARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). Cell viability was normalized to untreated cells grown under the same conditions. Each test substance was measured in triplicate. The same experiment was performed with differentiated 3T3-L1 adipocytes, as well as during differentiation (treatment started at medium 2 addition).
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7

Cytotoxicity Evaluation of Essential Oils

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The cytotoxic effects of EOs used in this study were evaluated by using a resazurin-based in vitro toxicology assay (Sigma-Aldrich, Schnelldorf, Germany), according to the manufacturer’s instructions. Briefly, cells (Hela: 40,000, Caco-2: 120,000, STF1: 40,000 cells/well) were seeded into 96-well plates, grown to 90% confluency, and incubated with EOs at different concentrations (0.0016–1% [v/v]) for 24 h at 37 °C. Subsequently, the cells were washed and incubated with medium containing 10% resazurin for 2 h. The concentrations of the reduced form of resazurin (resorufin) were then determined using a microplate reader in fluorescence mode (544 nm excitation and 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using the Omega MARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). Cell viability was normalized to untreated cells grown under the same conditions. Each test substance was measured in triplicate.
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8

Resazurin-based Cytotoxicity Assay Protocol

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Cytotoxic effects of compounds under study were evaluated by using a resazurin‐based in vitro toxicology assay (Sigma‐Aldrich; Schnelldorf, Germany), according to the instructions of the manufacturer. Briefly, cells were seeded into 96‐well plates (30 000 cells per well), grown to 90% confluence, and incubated with the test substances for 4 h at 37 °C. Subsequently, the cells were washed and incubated with a medium containing 10% resazurin for 2 h. Levels of the reduced form of resazurin (resorufin) were then determined using a microplate reader in fluorescence mode (544 nm excitation, 590 nm emission; POLARstar Omega, BMG LABTECH, Ortenberg, Germany). Data were analyzed using OmegaMARS Data analysis software package (BMG LABTECH, Ortenberg, Germany). Cell viability was normalized to untreated cells grown under the same conditions. Each test substance was measured in triplicate.
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