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Anti gapdh 6c5

Manufactured by Santa Cruz Biotechnology
Sourced in United States

Anti-GAPDH (6C5) is a mouse monoclonal antibody that recognizes the GAPDH (Glyceraldehyde-3-Phosphate Dehydrogenase) protein. GAPDH is a key enzyme involved in the glycolytic pathway and is commonly used as a loading control or reference protein in various biochemical and cell biology applications.

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33 protocols using anti gapdh 6c5

1

Quantifying Protein Sulfenylation via Biotin Labeling

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Cells labeled with DYn-2, which was prepared as described by Paulsen et al.,22 (link) were washed three times with ice-cold PBS, then lysed with mild detergent buffer described in Immunoblotting for 20 min, and centrifuged at 4 °C and 12000g for 10 min. The protein supernatant was normalized to 1.5 mg/mL and precleared of endogenous biotin by agitation in a 150 μL slurry of Pierce NeutrAvidin agarose (N-agarose, Life Technologies). Cleared samples were labeled with biotin using copper-catalyzed azide alkyne cycloaddition (CuAAC) by agitation for 1 h in a buffer containing the following (final concentrations): biotin azide (0.2 mM), TBTA (0.1 mM), Cu2SO4 (1.0 mM), and SA (1.0 mM). An aliquot of each sample was immunoblotted for total sulfenylation probed against Pierce High Sensitivity NeutrAvidin-HRP (N-HRP, Life Technologies). The remaining post-CuAAC sample was separated into equal aliquots for immunoprecipitation overnight at 4 °C with anti-GAPDH (6C5) (Santa Cruz) or anti-PTP1B (H-135) (Santa Cruz) followed by rotation for 2 h with Protein A-agarose. Samples were then prepared for immunoblotting and probed against N-HRP (Life Technologies), and anti-GAPDH (6C5) or anti-PTP1B (H-135) (both from Santa Cruz).
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2

Interferon Signaling Pathway Modulation

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Rhesus IFNα2 was obtained from R&D systems. Human IFNα and universal type I IFN (uIFN) were obtained from PBL Assay Science. MG132 (Fisher Scientific) was dissolved in DMSO and used at the indicated concentrations for 16 hours. Control wells were treated with same concentration of DMSO without MG132. Trimethoprim (TMP; Sigma-Aldrich) was dissolved in DMSO and used 10 μM or less where indicated. Viral cultures were supplemented with fresh TMP every 24 hours. The following antibodies were used for detection of endogenous and viral proteins in western blot: anti-ISG15 F-9 (Santa Cruz), anti-ISG54/IFIT2 (Abcam), anti-Mx-1 (GeneTex), anti-STAT1 M22 (Santa Cruz), anti-phosphorylated STAT1 Tyr701 (Santa Cruz), anti-STAT2 C20 (Santa Cruz), anti-phosphorylated STAT2 Tyr690 (Cell Signaling Technology), anti-IRF9/ISGF3γ clone 6 (BD Biosciences), anti-GAPDH 6C5 (Santa Cruz), anti-p84 5E10 (GeneTex), anti-IRF1 H-205 (Santa Cruz), anti-IRF3 (Santa Cruz) and anti-FLAG M2 (Sigma-Aldrich). The monoclonal antibodies specific for SVV and VZV ORF63 (clone 63_6), ORF62 (clone 62_6) and ORF31 (clone 31C_8) have been previously described [35 (link)]. STAT2 C20 (Santa Cruz) was also used for immunofluorescence microscopy.
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3

Exosome and Cell Lysis for Immunoblotting

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Cells and exosomes were lysed in n-octyl-β-D-glucoside (ODG) buffer (20 mM Tris-HCl, pH7.4, 150 mM NaCl, 1 mM EDTA, 1 mM sodium orthovanadate, 20 mM NaF, 1% Nonidet P-40, 5% glycerol, 2% ODG and protease inhibitor cocktail), and immunoblotting was performed as previously described53 (link). The following antibodies were used: anti-Alix (ABC40, Merck), anti-HIF1α (D1S7W, Cell Signaling Technology, Danvers, MA, USA), anti-CD63 (MX-49.129.5, Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-mCherry (1G9, MBL, Nagoya, Japan) and anti-GAPDH (6C5, Santa Cruz Biotechnology). Anti-Nluc rabbit polyclonal antibody was kindly provided by Promega.
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4

Antibody Validation for Protein Analysis

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Anti-GAPDH (6c5), and anti-AR antibodies were purchased from Santa Cruz Biotechnology (Santa Cruz, CA). Anti-MMP1 and Anti-MMP13 antibodies were purchased from Bioss (bs-4597R, bs-0575R, Woburn, MA). Anti-Human IL-8 antibody was purchased from Peprotech (500-p28, Rocky Hill, NJ). Recombinant Human IL-8 was purchased from R and D Systems (208-IL-010, Minneapolis, MN). MMP1 inhibitor was purchased from EMD Millipore (#444250, Gibbstown, NJ) and MMP13 inhibitor was purchased from Sigma (CL-82198, St Louis, MO). Polyvinylidene defluoride membrane (PVDF) was from Thermo Fisher Scientific (Rochester, NY). Anti-mouse/rabbit secondary antibody for Western blot was from Invitrogen (Grand Island, NY).
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5

Western Blot Analysis of Cellular Proteins

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Samples were normalized by protein concentration with PBS, mixed 1:1 with 2x SDS-PAGE loading buffer, boiled for 10 min., separated by SDS-PAGE, and transferred to PVDF. Proteins were detected by western blot using the following primary antibodies: Anti-CypA (C-14), anti-CypB (k2E2), anti-ERGIC (H-245), anti-actin (C4), and anti-GAPDH (6C5) were obtained from Santa Cruz Biotechnology (Santa Cruz, CA); and anti-Topo IIa was from BD Biosciences (San Jose, CA). The HRP-conjugated anti-Flag (M2) antibody was from Sigma-Aldrich (St Louis, MO). HRP-conjugated anti-rabbit and anti-mouse IgG secondary antibodies were also from Santa Cruz Biotechnology. Antibody binding was detected and visualized by West Pico chemiluminescent staining (Thermo Scientific, Rockford, IL). Images were captured by exposure to radiographic film, scanned to computer, adjusted for brightness and contrast if necessary, and cropped for size.
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6

Antibody and Chemical Acquisition

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We obtained anti-AR (441), anti-GABBR2 (H-10), and anti-GAPDH (6c5) antibodies from Santa Cruz Biotechnology (Dallas, TX, USA). DHT and HF, CGP46381, and CDDP were obtained from Sigma-Aldrich (St. Louis, MO, USA), Thermo Fisher (Waltham, MA, USA), and Santa Cruz Biotechnology (Dallas, TX, USA), respectively.
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7

SDS-PAGE and Immunoblot Analysis

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Proteins were separated by 4–12% SDS-PAGE, followed by standard
immunoblot analysis with anti-Myb (Millipore, clone 1–1), anti-GAPDH
(6C5; Santa Cruz Biotechnology), horseradish peroxidase–conjugated goat
anti–mouse IgG (sc-2031; Santa Cruz Biotechnology) and horseradish
peroxidase–conjugated goat anti–rabbit IgG (sc-2030; Santa Cruz
Biotechnology).
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8

Western Blot Analysis of B3GNT5 and GAL3ST1

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Western blots were performed as previously described [27] (link). Briefly, cell lines were harvested and lysed with RIPA lysis buffer (Cat# 89900, Thermo Fisher Scientific, USA). Protein concentration was determined by using the Pierce BCA Protein assay kit (Cat# 23225, Thermo Fisher Scientific). 10–30 μg of protein from each sample was loaded onto 8-12% polyacrylamide gels. The protein was then transferred to a nitrocellulose membrane and incubated 1h in 5% milk Tris-buffered saline with 0.1% Tween-20 (TBS-T), followed by an overnight incubation of primary antibody diluted at 1:250 in 2.5% milk in TBS-T for 1 h at room temperature. The following primary antibodies were used: rabbit polyclonal anti-B3GNT5 (Cat# Ab238819, Abcam, USA), rabbit polyclonal anti-GAL3ST1 (Cat# Ab232758, Abcam, USA), mouse monoclonal anti-GAPDH (6C5) (Cat# sc-32233, Santa Cruz Biotechnology, USA). Chemiluminescence was detected by using the ECL detection system (Bio-Rad, USA).
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9

Western Blotting with Antibody Panel

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Western blotting was performed as previously described.22 The following antibodies were used: anti‐Alix (ABC40) from Millipore Sigma; anti‐Tsg101 (C‐2), anti‐CD63 (MX‐49.129.5), anti‐ATP6V1B1/2 (F‐6) and anti‐GAPDH (6C5) from Santa Cruz Biotechnology; anti‐phospho‐ERK1/2 (D13.14.4E), anti‐ERK1/2 (137F5), anti‐phospho‐MEK1/2 (41G9), anti‐MEK1/2 (L38C12), and anti‐Ras (27H5) from Cell Signaling Technology; anti‐c‐MYC (Y69) from Abcam; anti‐TFEB (PA5‐34360) from Thermo Fisher Scientific; and anti‐TFE3 (HPA023881) from Sigma‐Aldrich65. All antibodies were used at a 1:1000 dilution.
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10

Mitochondrial Protein Analysis in HEK293T Cells

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Mitochondrial fractions were isolated from WT and OSGEPL1 KO HEK293T cells (1 × 107 cells) using the Mitochondria Isolation Kit (Miltenyi Biotec. K.K.) and subjected to western blotting to measure steady-state levels of protein components in respiratory chain complexes using the Total OXPHOS Rodent WB Antibody Cocktail (an antibody mixture targeting ATP5A, UQCRC2, MTCO1, SDHB, and NDUF88; ab110413, Abcam), an anti-ND5 antibody (ab92624, Abcam), and an anti-ND2 antibody (19704-1-AP, Proteintech). Other antibodies used in this study were as follows: anti-OSGEPL1 (25694-1-AP, Proteintech), anti-GAPDH (6C5, Santa Cruz Biotech), anti-FLAG-tag (1E6, Wako), HRP-conjugated donkey anti-mouse/rabbit IgG (715-035-150/715-035-152, Jackson ImmunoResearch), anti-FLAG M2 affinity gel (A2220, Sigma), and Alexa Fluor 488-conjugated goat anti-mouse IgG (A-11001, ThermoFisher). To monitor YRDC subcellular localization using the anti-FLAG-tag antibody, mitochondrial fractions were carefully washed with 2 mg/mL digitonin (Sigma) to remove the outer membrane with cytoplasmic components.
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