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14 protocols using ab195049

1

Western Blot Analysis of Aortic Proteins

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Protein levels of genes in the aorta were detected by Western blotting analysis. In brief, aortic tissue lysates were separated by 10% SDS-PAGE and transferred to 0.45 μm PVDF membranes (IPVH00010, Merck Millipore). After blocking in 5% skim milk (Cat#D8340, Solarbio; for non-phosphorylated protein) or 5% BSA (G5001-5G, Servicebio; for phosphorylated protein) for 2 h, the membranes were incubated overnight at 4°C with primary antibodies: p65NF-κB (1:1000, AF5006, Affinity Biosciences); p-p65NF-κB (1:1000, AB76302, Abcam); p38 mitogen-activated protein kinase (p38MAPK; 1:2500, ab170099, Abcam); p-p38MAPK (1:1000, AB195049, Abcam); VCAM-1 (1:5000, ab134047, Abcam); and β-actin (1:1000, GB15003, Servicebio). The membranes were then incubated with HRP-conjugated secondary antibody for 90 min at room temperature. Protein bands were visualized using ECL solution on Ultra Sensitive Multifunctional Imager (AI680RGB, GE, Japan) and analyzed using the ImageJ software.
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2

Exosomal Protein Analysis by Western Blot

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Western blotting was performed using the standard SDS-PAGE separation technique as previously reported18 (link),19 . The harvested cells were disrupted with RIPA cleavage buffer (Cell Signaling Technology). Proteins were extracted from exosomes using a Total Exosome Protein Isolation Kit (Invitrogen, Carlsbad, CA, USA) following the instructions supplied. The lysates were collected after centrifugation, and the protein concentration was quantified with BCA kit (Thermo Fisher Scientific). 50 mg of protein was added to sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then were transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, USA). The membranes were incubated overnight at 4 °C with antibodies against phosphor-JNK (ab124956), phospho-MAPK (ab195049), phospho-ERK (ab201015), phospho-NF-κB (ab76302), TRAF-6 (ab33915) and GAPDH (ab8245) purchased from Abcam. Subsequently, the membranes were incubated with a secondary antibody for 1.5 h at room temperature. Immunoreactive protein bands were detected using an Odyssey scanning system (USA), quantified by Image J, and normalized to the corresponding amount of total protein. The experiment was repeated in triplicate with 3 replicates.
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3

Western Blot Analysis of Liver Proteins

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Liver tissue was homogenized in lysis buffer and centrifuged at 13,200 rpm for 20 min. Primary hepatocytes were lysed in Nonidet P-40 lysis buffer (Thermo Fisher Scientific, Inc., Shanghai, China). Following separation with 8% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), the proteins were transferred onto polyvinylidene fluoride (PVDF) membranes. Subsequently, the PVDF membranes were blocked using 5% non-fat milk or 5% bovine serum albumin (BSA) and subsequently cultivated with primary antibodies targeting Bcl-2 (ab196495; 1:1,000; Abcam, Shanghai, China), Bax (ab32503; 1:1,000; Abcam), cleaved caspase3 (19677-1-AP; 1:10,000; Proteintech, Wuhan, China), RAGE (ab216329; 1:1,000; Abcam), phosphorylated (p)-p38 (ab195049; 1:1,000; Abcam), p38 (ab170099; 1:1,000; Abcam), or glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (ab181602; 1:10,000; Abcam) overnight at 4 °C. Thereafter, they were subjected to horseradish peroxidase (HRP)-labeled rabbit anti-rat secondary antibody (ab6734; 1:1,000; Abcam) or HRP-labeled rabbit anti-mouse secondary antibody (ab6728; 1:2,000; Abcam) at room temperature for 2 h. Finally, enhanced chemiluminescence (ECL) (Yeasen Biotech, Shanghai, China) and Image J software (version 146, National Institutes of Health, USA) were adopted for the visualization and analysis of the protein bands.
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4

Western Blot Analysis of Microglial Proteins

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Radioimmunoprecipitation Assay Lysis Buffer (Beyotime, Nanjing, China) was used to extract proteins from microglial cells. Bicinchoninic Acid Protein Assay Kit (Thermo Fisher Scientific, Waltham, MA, USA) was applied to determine the concentration of isolated proteins. Protein samples were loaded at 12% sodium dodecyl sulfate polyacrylamide gel electrophoresis and then transferred onto polyvinylidene fluoride membranes (Millipore, USA). Subsequently, the membranes were incubated with primary antibodies at 4°C overnight, which included anti-Map3k12 (JK221305, Shanghai JingKang Bioengineering CO., LTD., Shanghai, China), anti-BACE1 (ab183612, 1:1000, Abcam), anti-Tau-5 (ab80579, 1:1000, Abcam), anti-p-ERK1/2 (ab278538, 1:100, Abcam), anti-ERK1/2 (ab17942, 1:1000, Abcam), anti-p-p38 (ab195049, 1:1000, Abcam), anti-p38 (ab31828, 1:1000, Abcam), and GAPDH (ab8245, 1:1000, Abcam). Then, the membranes were incubated with secondary antibodies at room temperature for 2 h. The protein bands were imaged by enhanced chemiluminescence reagent (Bio-Rad) and analyzed by ImageJ software (National Institutes of Health, Bethesda, MA, USA) [40 (link)].
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5

Lung Tissue Protein Analysis

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Lung tissues (50 mg per mouse) were homogenized in ice‐cold RIPA buffer (Sigma‐Aldrich) with a 1% protease inhibitor cocktail and a phosphatase inhibitor, and protein concentration was examined using a BCA Protein Assay Kit (Beyotime, Shanghai, China). Thereafter, proteins (40 μg) were separated by 10% SDS‐PAGE and blotted onto a PVDF membrane. After blocking with 5% skimmed milk for 2 h, the membrane was incubated overnight with primary antibodies against p‐JAK2 (ab32101, 1:4000; Abcam), JAK2 (ab108596, 1:5000; Abcam), phosphorylated STAT3 (ab76315, 1:5000; Abcam), STAT3 (ab68153, 1:2000; Abcam), SOCS3 (ab280884, 1:1000; Abcam), p‐NF‐κB p65 (ab76302, 1:1000; Abcam), NF‐κB p65 (ab32536, 1:1000; Abcam), p‐p38 MAPK (ab195049, 1:1000; Abcam), p38 MAPK (ab170099, 1:1000; Abcam), and GAPDH (ab9485, 1:2500; Abcam) at 4°C, and subsequently incubated with secondary antibodies for 2 h at room temperature. The bands were visualized by enhanced chemiluminescence reagent (Beyotime), and the intensity of blot was quantified by Image Lab 3.0 software (Bio‐Rad, Hercules, CA, USA).
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6

Western Blot Analysis of Signaling Pathways

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The PTC tissues and cells lysates were collected using RIPA buffer (Invitrogen, shanghai, China) and protease inhibitor cocktail (#5871; Beverly, MA, USA). Protein concentrations were calculated using Bicinchoninic Acid Kit (Takara; Merck KGaA) referring to the manufacturer’s protocols. Immunoblotting procedures followed the previously published method [13 ]. Equal amounts (60 µg) of total tissues or cellular proteins were added into loading buffer, boiled for 5 min, and separated on 10 % SDS-PAGE electrophoresis. Subsequently, the proteins were metastasized to nitrocellulose (NC) membranes. Then we blocked the membranes with 5 % non-fat dry milk for 1 h at room temperature and hatched overnight with primary antibodies. Following further incubated with secondary antibody for 1 h, the immunoreactive protein strips were visualized by ECL kit (Thermo, CA, USA) on the Bio-Rad Chemical Doc XRS system (Bio-Rad). The primary antibodies were including anti-p-p38 (ab195049; 1:2000), anti-p38 (ab250612; 1:1000), anti‐p-JAK2 (ab32101; 1:1500), anti‐JAK2 (ab39636; 1:800), anti‐p-STAT1 (ab215820; 1:1000), anti‐STAT1 (ab155933; 1:1000) and anti‐β‐actin (ab179467; 1:5000) were purchased from Abcam.
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7

Western Blot Analysis of Cell Signaling

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Cell lysate was collected using RIPA lysis buffer. The cell protein mass of each lysate was determined by BCA Protein Assay Reagent (Pierce, IL). Proteins were separated using 10% SDS-polyacrylamide gel electrophoresis (SDS-PAGE), transferred to membranes (0.22 μm, Sigma) and incubated with primary antibodies at 4°C overnight. The primary antibodies are as follows: antibodies against VEGFA (1/1000; ab1316, Abcam), TGFβ1 (1/1000; ab215715, Abcam), Angiopoietin-1 (1/20000; ab183701, Abcam), ZO-1 (1/1000; ab216880, Abcam), Occludin (1/1000; ab216327, Abcam), Claudin-5 (1/1000; ab131259, Abcam), G3BP2 (1/2000; ab86135, Abcam), p-p38 (1/1000; ab195049, Abcam), p38 (1/2000; ab170099, Abcam), p-p53 (1/2000; ab33889, Abcam), p53 (1/1000; ab26, Abcam), and GAPDH (1/500; ab8245, Abcam). Next, the membranes were incubated with HRP-conjugated secondary antibody IgG (1/2000; ab7090, Abcam) at room temperature for 2 h. GAPDH antibody served as a negative control. At last, the protein bands were visualized by an ECL Western Blotting Substrate Kit (ab65623, Abcam) and quantified by the ImageJ software.
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8

ALK Cytotoxicity Evaluation in RAW 264.7 Cells

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Dimethyl sulfoxide (DMSO), ultra-pure E. coli K12, LPS, and MTT were purchased from Sigma. ALK (98% purity) was purchased from Sichuan Victory (ALK structure is shown in Figure 1a). ELISA kits were purchased from R&D Systems. fetal bovine serum (FBS) and dulbecco’s modified eagle medium (DMEM) were obtained from HyClone. Antibodies were purchased from Abcam (Cambridge, UK) or Proteintech (Rosemont, IL, USA), including anti-iNOS (ab210823, Abcam), anti-COX-2 (ab169782, Abcam), anti-p-P38 (ab195049, Abcam), anti-p38 (ab170099, Abcam), anti-p-ERK1/2 (ab201015, Abcam), anti-ERK1/2 (ab17942, Abcam), anti-p-JNK (ab47337, Abcam), anti-IL-6 (ab233706, Abcam), anti-IL-1β (ab254360, Abcam), anti-TNF-α (ab183218, Abcam), anti-JNK (ab213521, Abcam), anti-p-p65 (ab76302, Abcam), anti-p65 (ab16502, Abcam), anti-p-IκB-α (ab133462, Abcam), anti-IκB-α (ab32518, Abcam), and anti- glyceraldehyde-3-phosphate dehydrogenase (GADPH; ab8245, Abcam).

ALK had limited cytotoxicity in RAW 264.7 cells. (a) the chemical structure of ALK was presented. (b) RAW264.7 cells were exposed to 1, 3, 5, 10 or 20 μM ALK for 24 h. The cell viability was assessed by MTT assay.

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9

Osteoclastogenesis-related Protein Expression

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RAW264.7 cells cultured with RANKL or RANKL & rosavin (5 µM) for different durations were prepared for western blotting to determine the expression of osteoclastogenesis-related proteins, including phosphorylated (p)-p65, p-inhibitory subunit of NF-κB (IκB), p-extracellular-signal-regulated kinase (ERK), p-c-Jun N-terminal kinase (JNK), and p-p38. The samples were probed overnight with primary antibodies against β-actin (1:2,000, GB12001, Servicebio, China), TRAP (1:1,000, ab191406, abcam, USA), Cathepsin K (1:1,000, ab19027, abcam, USA), MMP-9 (1:1,000, ab219372, abcam, USA), CTR (1:1,000, ab114596, abcam, USA), TRAF6 (1:500, 13411-1-AP, proteintech, USA), p-p65 (1:10,000, ab76302, abcam, USA), p65 (1:1,000, ab32536, abcam, USA), IκBα (1:10,000, ab133462, abcam, USA), p-ERK (1:1,000, ab201015, abcam, USA), ERK (1:1,000, GB12087, Servicebio, USA), p-JNK (1:1,000, ab124956, abcam, USA), JNK (1:1,000, ab179461, abcam, USA), p-p38 (1:1,000, ab195049, abcam, USA), and p38 (1:1,000, ab31828, abcam, USA). The membranes were subsequently incubated with secondary antibodies of anti-rabbit IgG (1:2,000, ab6721, abcam, USA). The experiments were independently performed three times, and the data were analyzed using the t-test.
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10

Western Blot Analysis of Protein Expression in Rat Infarct Cortex

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Collected infarcted cortex tissue of rats was sonicated in the homogenization buffer (RIPA with protease cocktail inhibitor, phosphatase inhibitor, and phenylmethanesulfonyl fluoride). Protein concentration was determined using the bicinchoninic acid assay. Equal amounts of the samples and sample buffer were mixed and boiled for 10 min at 95°C and were subjected to sodium dodecyl sulfate polyacrylamide gel electrophoresis on 10% gel, and the proteins were transferred to a PVDF membrane (Millipore, PA, USA). The membrane was then incubated with the following primary antibodies overnight at 4℃: p38 (1:1,000, Abcam, ab170099), p-p38 (1:1,000, Abcam, ab195049), JNK (1:1,000, Abcam, ab179461), p-JNK (1:1,000, Abcam, ab124956), ERK1/2 (1:1,000, Abcam, ab184699), p-ERK1/2 (1:1,000, CST, 4370T), Iba-1 (1:1,000, Abcam, ab178847), iNOS (1: 1,000; Abcam, ab178945), SOD1 (1:1,000; Abcam, ab51254), Bax (1:500, Proteintech, 50599-2-Ig), and Bcl-2 (1:500, Proteintech, 12789-1-AP). After washing with TBST three times, the membrane was incubated with horseradish peroxide-conjugated secondary antibodies for 60 min at room temperature. The chemiluminescence signals were captured using EPSON Imaging System (EPSON; V300, Japan). Densitometric analysis was performed using Alpha Software (Alpha Innotech; alphaEaseFC, USA). β-Actin was used as a loading control.
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