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29 protocols using methylcellulose medium

1

Clonogenic Assay of miR-375 in AML

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Bone marrow mononuclear cells (blasts% > 70%) from six AML patients were harvested. CD34+ cells were enriched by immunomagnetic positive selection kit (Stem Cell Technologies), followed by the retrovirus transduction of MSCV-miR-375 or MSCV-NC. Retrovirus-transduced CD34+ cells (5×103) were seeded on a 35-mm dish with 1.0 ml of methylcellulose medium (MethoCult™ H4434 Classic, Stem Cell Technologies). HL-60 and THP1 cells, which were transduced with MSCV-miR-375 or MSCV-NC, were seeded in the same methylcellulose medium (Stem Cell Technologies). Normal CD34+ cells were isolated and enriched from UCB, followed by the retrovirus transduction of MSCV-miR-375 or MSCV-NC and then were plated in the same methylcellulose medium (Stem Cell Technologies). Colonies were scored 10–14 days after plating according to the manufacturer’s protocol.
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2

Murine Hematopoietic Stem Cell Assay

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Single‐cell suspensions from BM and PB were stained with panels of fluorochrome‐conjugated antibodies (Table S1). Flow cytometric analysis of HSPCs was performed as previously described (Cao, Cai, et al., 2015). The analyses were performed using a FACSCalibur or Beckman Coulter Gallios. All data were analyzed using FlowJo software or Kaluza. BM lin cells were sorted using Mouse Lineage Cell Depletion Kit (130090858, Miltenyi Biotec). Cells were sorted by BD FACSAria III. LSK cells were plated in triplicate in methylcellulose medium (03134, STEMCELL Technologies) supplemented with mouse stem cell factor (mSCF) (100 ng/ml), mouse IL‐3 (mIL‐3) (10 ng/ml), mouse erythropoietin (mEPO) (4 U/ml), mouse thrombopoietin (mTPO) (50 ng/ml), mouse granulocyte–macrophage CSF (mGM‐CSF) (10 ng/ml), and human IL‐6 (50 ng/ml, PeproTech). The cells were then scored on day 10 of the cultures at 37°C and 5% CO2.
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3

Quantification of Cell Viability and Clonogenicity

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MTT assay was performed in 96-multiwell plates. Cells were incubated with 0.5 mg/mL MTT (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide, Sigma Aldrich) at 37 °C for two hours; then, formazan crystals were dissolved with 0.1 M HCl in 2-propanol and absorbance was measured at 570 nM. Cell cycle analyses were performed by propidium iodide staining (50 µg/mL) of cells permeabilized with 0.1% Triton, 0.1 % sodium citrate followed by flow cytometry determination of DNA content. For clonogenic assays, cells were pre-treated with 1 µg/mL doxycycline (Research Product International) for 24 h or treated with drugs and immediately seeded in 1% methylcellulose medium (Stem Cell Technology) at 2,500–5,000 cells/mL. Colonies were counted after 7–10 days.
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4

Hematological Toxicity Evaluation of TC11

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To evaluate the hematological toxicity of TC11, 4×104 cells/mL of bone marrow cells from 13-wk-old male ICR mice were cultured in methylcellulose medium (Stem Cell Technologies, Vancouver, BC) containing FBS, 2-mercaptoethanol, 20 ng/mL mouse stem cell factor (mSCF), 20 ng/mL mouse interleukin 3 (mIL-3), 10 ng/mL mouse interleukin-6 (mIL-6), and 1 U/mL human erythropoietin (hEPO) (kindly provided by Kyowa Hakko Kirin Co., Tokyo) in the presence or absence of TC11. On day 14, various types of colony-forming cells were counted.
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5

Tet1 Mutation Effects on Murine Hematopoiesis

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Total bone marrow from Tet1+/+, Tet1+/− and Tet1−/− mice (24 weeks of age) was plated in methylcellulose medium (Stem Cell Technologies); M3630 for pre-B, M3434 for myeloid/erythroid and M3630 supplemented with Flt3L (50ng/ml) for pro-B colony formation. Cells were seeded at a density of 20,000 cells/ml for pro-B or pre-B and 2,000 cells/ml for myeloid progenitor colony formation assay. Colony forming units were counted and re-plated (2000 cells/replicate) every 7–10 days.
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6

Establishing CDDP-Resistant Lung Cancer Cells

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Parental NCI-H460-Luc2 cells (Caliper Life Sciences, Hopkinton, MA) and CDDP-R H460-Luc2 cells were cultured in RPMI 1640 (American Type Culture Collection, Manassas, VA) supplemented with 10% fetal bovine serum (FBS; Invitrogen, Carlsbad, CA) and 1% penicillin-streptomycin (Invitrogen) at 37°C and humidified 5% CO2. Cisplatin (CDDP), basic fibroblast growth factor (bFGF), and insulin were obtained from Sigma-Aldrich (St Louis, MO). Epidermal growth factor (EGF) was obtained from BD Biosciences (San Jose, CA). Methylcellulose medium was purchased from STEMCELL Technologies (Vancouver, BC, Canada). BEZ-235 was obtained from Novartis Pharmaceuticals (Basel, Switzerland).
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7

Umbilical Cord Blood CD34+ Cell Expansion

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Purified umbilical cord blood CD34+ cells were co-cultured with hESC-MSCs or hBM-MSCs for 2 weeks [15 (link)]. To estimate the effects of MSCs on CFU growth in vitro, the co-cultured UCB-CD34+ cells were collected and seeded on a sterile 24-well plate and incubated in methylcellulose medium (Stem Cell). Then, numbers of colonies were calculated. Each group’s experiments were implemented in triplicates.
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8

Murine Hematopoietic Progenitor Cell Assay

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Colony formation assays were performed in accordance to a modified version of a previously reported protocol 16 (link). Donor murine BM cells were isolated from 6-week old B6.SJL (CD45.1) after injecting 5-fluorouracil (5-FU; 150mg/kg) for 5 days, and hematopoietic progenitor cells were isolated via a Mouse Lineage Cell Depletion Kit (Miltenyi Biotec Inc., Auburn, USA). These progenitor cells then underwent infection with the indicated viruses using a spinoculation protocol with the assistance of polybrene 36 (link)-38 (link). Following transduction, cells were incubated overnight at 37oC in fresh media, and this was then repeated the following day. Thereafter, 2 × 104 cells were plated in methylcellulose medium (Stem Cell Technologies Inc, Vancouver, Canada) containing 10 ng/ml IL-3, IL-6, granulocyte-macrophage colony-stimulating factor (GM-CSF), 30 ng/ml SCF, and 2 μg/ml puromycin and/or 1 mg/ml G418, as appropriate. After incubating for 7 days, colony formation in each of the experimental groups was assessed, and these colonies were then replated.
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9

Single-cell hematopoietic colony assay

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Antibody list: Alexa Fluor® 488 anti-human CD41 Antibody (Biolegend, cat# 303723), APC anti-human CD235ab Antibody (Biolegend, cat# 306607), CD66b-Alexa594 (Biolegend, cat# 392907), CD14-BV421 (Biolegend, cat# 325627).
Single hemogenic endothelial cell was seeded in fibronectin coated 96-well plates (Cellvis, cat# P96–1.5P) as described above. Cells were cultured in 100 μL of methylcellulose medium (STEMCELL Technologies, cat# 4435) per well for 8 days before staining for CFU-E and BFU-E, for 14 days before staining for CFU-GM and CFU-GEMM. For staining, antibodies were 1:100 diluted in IMDM (GIBCO, cat# 12440046). 30 μL of diluted antibodies was added to each well on top of the methylcellulose medium (pipette slowly so as not to disturb the hematopoietic colonies). Incubate plates at 37°C overnight before imaging with fluorescence microscope.
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10

Quantification of Erythroid Colony Formation

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Mononuclear cells (MNCs) were prepared from bone marrow or spleen tissue using Histopaque (Sigma), and 1.0×105 MNCs were cultured in a 3.5-cm dish containing methylcellulose medium (Stem Cell Technologies) supplemented with CID or rHuEPO. After 3 days of culture, the cells were stained with benzidine (Wako), and positive colonies were counted as colony-forming unit-erythroid (CFU-E). To count erythroid burst-forming unit erythroid (BFU-E)–derived colonies, the cells were cultured with 2.0 U/mL rHuEPO and 100 ng/mL stem cell factor (SCF, R&D Systems) for 7 days [23 (link)].
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