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8 protocols using q sepharose hp

1

Purification of OM Proteins from Membranes

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For purification of OM proteins from 0.3 to 0.5 g of treated membranes, a 2-ml bed of anion-exchange medium (Q Sepharose HP; GE Healthcare) was equilibrated in buffer A (20 mM HEPES, pH 7.4, 2 mM NaN3) containing 1% OG. Detergent-solubilized samples were loaded onto the column, and the column was washed to remove nonspecifically bound material using buffer A. Bound proteins were eluted in 8- to 12-ml steps at 50 mM NaCl increments over a range of from 50 to 400 mM NaCl, followed by a final step of elution with 1 M NaCl. The elution buffer was prepared by mixing buffer A with increasing levels of buffer B (buffer A with 1 M NaCl added).
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2

Characterization and Purification of Tannase

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Sporidiobolus ruineniae A45.2 was grown in 1-L fermenter for 48 h according to the method previously described. Cell pellets were harvested by centrifugation at 8000×g, 4 °C for 20 min, washed twice with sodium phosphate buffer pH 6.0, resuspended in the same buffer and used as CAT for the purposes of characterization. For the purposes of enzyme purification, the cell suspension was supplemented with 0.5% (w/v) triton X-100 as the final concentration. Cell suspension was agitated at 4 °C and 50 rpm for 6 h before being centrifuged at 8000×g, 4 °C for 5 min. The clear supernatant was collected and used for enzyme purification. Free tannase was applied onto a 20 mL Q-sepharoseHP (GE Healthcare Bio-Sciences, Uppsala, Sweden) column that was equilibrated with 20 mM of sodium phosphate buffer at pH 7.0. The tannase was eluted by a linear gradient of 0–1000 mM of sodium chloride in 20 mM of sodium phosphate buffer pH 7.0 and with a flow rate of 0.5 mL/min. Active fractions were pooled and desalted using 10 kDa cut-off Amicon Ultra Centrifugal filter tubes (Millipore, Bileria, MA, USA).
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3

Purification of Recombinant XcPrxQ Protein

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The gene for XcPrxQ, codon-optimized for expression in E. coli and synthesized by GenScript (Piscataway, NJ), was cloned between the NcoI and HindIII sites of pTHCm(Nelson et al., 2008 (link)) to express a non-His-tagged protein. Mutations were created using the QuikChange II method (Agilent). Expression was carried out in strain B834, using ZYM-5052 auto-induction medium at 37 °C (Studier, 2005 (link)). Purifications were done at 4 °C. Cells were disrupted using an Avestin C5 homogenizer, nucleic acids removed using streptomycin sulfate, and after overnight dialysis against 10 mM Tris-Cl, pH 8.0, 0.5 mM EDTA and centrifugation, the supernatant was loaded onto a 75 mL Q-Sepharose HP (GE Healthcare) column. XcPrxQ was eluted using a 0→1 M NaCl gradient, with XcPrxQ-containing fractions precipitated at 75 % saturating ammonium sulfate. The protein pellet was dissolved in a minimal volume of 25 mM potassium phosphate, pH 7.0, 1 mM EDTA and 0.1 M NaCl, and loaded onto a 250 mL Superose 12PG (GE Healthcare) column equilibrated with the same buffer. For assays, pure protein was buffer-exchanged into 20 mM Tris-Cl, pH 8.0, 1 mM EDTA, and concentrated to 10 mg ml−1 by ultrafiltration, and frozen at −80 °C in aliquots. E. coli thioredoxin 1 (TrxA) and thioredoxin reductase (TrxR) were expressed and purified as previously described (Reeves et al., 2011 (link)).
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4

Purification and Characterization of RIG-I-like Receptors

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GST-Flag MDA5 was produced using the Bac-to-Bac Baculovirus Expression System (Invitrogen, Life Technologies). The protein was expressed as a GST fusion protein in High Five insect cells and purified using Glutathione Sepharose 4B (GE Healthcare). The GST tag was removed by AcTeV protease (Invitrogen). Coexisting nucleic acids were removed by Q Sepharose HP (GE Healthcare). The final protein conformation was examined by AFM.
6xHis-Flag LGP2 was produced using the Baculovirus Expression System. The protein was expressed as an N-terminal 6xHis tag fusion protein in High Five insect cells. 6xHis-Flag LGP2 was bound to Ni Sepharose 6 Fast Flow (GE Healthcare) and eluted in elution buffer containing 50 mM Tris–HCl (pH 8.0), 150 mM NaCl, 1.5 mM DTT and 500 mM imidazole. Imidazole was removed by PD-10 Desalting Column (GE healthcare). LGP2 K30G was produced similarly.
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5

Glycogen Synthase Regulation Analysis

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Rabbit liver glycogen and pancreatic α-amylase were from Sigma. Microcystin-LR was from Enzo Life Sciences. NADH was from Apollo Scientific. Antibodies against pS8 GYS1 and pS8/S11 GYS1 were kindly donated by D. Grahame Hardie (University of Dundee). pS641 GYS1 (#3891) and total GYS1 (#3893) antibodies were from Cell Signaling Technologies. Total GYS1 (sc-81173) and PP1c (sc-7182) antibodies were from Santa Cruz Biotechnology. pS641/645 GYS1 (S486A, 3rd bleed) and GN1 (S197C, 1st bleed) antibodies were generated by the Division of Signal Transduction Therapy (DSTT) at the University of Dundee as previously described [4] (link). Peroxidase conjugated secondary antibodies were from Jackson Immunoresearch. Glutathione Sepharose 4B, NHS-Sepharose FF, Superdex 200 3.2/300, Q-Sepharose HP and Enhanced Chemiluminescent (ECL) reagent were from GE Healthcare. Gel filtration standards were from Bio-Rad (151-1901). All other reagents, unless otherwise indicated, were from Sigma.
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6

Expression and Purification of PP1C and PP5C

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Expression constructs for human PP1C (PPP1CA; Human genome nomenclature committee (HGNC) ID: HGNC:9281) and PP5C (PPP5C; HGNC:9322) were created using standard cloning methods as previously described.6 (link),20 (link),22 (link),23 (link) Expression and purification of PP5C was performed essentially as described previously.22 (link),23 (link) For PP1C, the commercial vector pMal-c2E (New England Biolabs) was used to express the N-terminal maltose binding protein (MBP) fusion to the PPP1CA ORF in BL21(DE3) Tuner pLacI cells (Novagen). The MBP-PP1C fusion protein was purified using heparin-sepharose affinity chromatography. Following digestion with enterokinase (New England Biolabs), PP1C was separated from MBP by anion exchange chromatography on Q-sepharose HP (GE Life Sciences). Phosphatase preparations were divided into aliquots and stored at −80 °C (PP1C storage buffer: 20 mM tris pH 7.4, 0.01 mM EDTA, 0.01% CHAPS, 1 mM MnCl2; PP5C storage buffer: 40 mM tris pH 7.5, 1 mM tris-carboxyethyl phosphine, 1 mM sodium azide). Working stocks of enzymes for low throughput confirmation assays were stored at −20 °C in tris buffer containing 50% glycerol, 2 mM DTT, 0.1 mg/mL BSA and 2 mM MnCl2.
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7

Purification of Native Clostridium difficile Toxin B

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Native TcdB was produced by culturing C. difficile (VPI 10463 and BI17 6493) by the dialysis method as previously described (31 (link), 32 (link)). From these cultures, supernatants were isolated and TcdA was removed by a thyroglobulin affinity chromatography protocol (32 (link)). After TcdA was removed, TcdB was purified by anion-exchange chromatography (Q-Sepharose HP; GE Healthcare) in 20 mM Tris-HCl (pH 8.0) and 20 mM CaCl2. This method yields native TcdB with a purity of >95%, as demonstrated by the single 270-kDa band obtained by SDS-PAGE analysis with Coomassie staining.
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8

Bovine Serum Albumin Protein Characterization

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As model proteins, two bovine serum albumin (BSA) products (cat. no. A1900 and cat. no. A7511) from Sigma-Aldrich (St. Louis, MO, U.S.A.) were used. Several commercial BSA products contain dimer and aggregates (Hunter and Carta, 2001; (link)Yoshimoto et al., 2013 (link)Yoshimoto et al., , 2015;; (link)Yoshimoto and Yamamoto, 2017) . A1900 is a monomer rich BSA while A7511 contains BSA dimer and aggregates (Yoshimoto et al., 2013 (link)(Yoshimoto et al., , 2015)) (link). As for the dimer sample, the puri-ed fraction by size exclusion chromatography (Superdex HiLoad 26/600, GE-Healthcare) was used.
Anion exchange chromatography gels, Q-Sepharose HP (GE-Healthcare, Uppsala, Sweden) was used. e gels are based on highly cross-linked 6% agarose matrices. e nominal particle diameter is 34 µm.
Other reagents were of analytical grade.
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