The largest database of trusted experimental protocols

30 protocols using ab23426

1

Investigating Notch Signaling Pathway

Check if the same lab product or an alternative is used in the 5 most similar protocols
Antibodies beta-actin (A2066; Sigma-Aldrich), cleaved Notch2 (C651.6DbHN; Developmental Studies Hybridoma Bank, University of Iowa, Iowa City, IA), HES1 (ab71559; AbCam, Cambridge, MA; TA500014, Origene, Rockville, MD), Notch-1, −3, and-4(ab52627, ab23426, and ab184742, Abcam), Jagged1 (sc11376; Santa Cruz Biotechnology), DLL1 (sc73899; Santa Cruz Biotechnology), p53 (DO1; Santa Cruz Biotechnology), FITC anti-p53 antibody (645803; Biolegend, San Diego, CA), PLK1 (50-171-861; Millipore, Billerica, MA), CHFR (H00055743-M01; Abnova, Taipei, Taiwan), PAR (4335-MC-100-AC; Trevigen, Gaithersburg, MD), MDM2 (OP115; Millipore), pMDM2(ser260) (orb129684; Biorbyt LLC, San Francisco, CA) (Bioworld Technology, Inc., St Louis Park, MN), phycoerythrin-labeled donkey anti-rabbit IgG antibody (406421; Biolegend), and anti-ubiquitin (U5379; Sigma-Aldrich) were used. PARP1 inhibitor 3ABA (300 μM; Sigma-Aldrich) (27 (link)), dimethyl sulfoxide (DMSO), Notch inhibitor N-[N-(3,5-difluorophenacetyl)-l-alanyl]-S-phenylglycine t-butyl ester (DAPT; Sigma-Aldrich), and PLK1 inhibitors BI6727 (volasertib) (28 (link)) and BI2536 (29 (link)) (Selleck Chemicals, Houston, TX) were used.
+ Open protocol
+ Expand
2

Immunohistochemical Profiling of OSCC

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemical staining, formalin-fixed, paraffin-embedded human OSCC tissue sections were used. The primary antibodies used were as follows: anti-NOTCH3, rabbit polyclonal, 1:200 (ab23426, Abcam, CA, USA); anti-SMA, mouse monoclonal, 1:100 (M0851, Dako, Glostrup, Sweden). Antigen retrieval was performed according to the manufacturer’s protocol. EnVision+ Dual Link (Dako) was used for secondary antibody, and coloration was conducted with diamino-benzidine substrate. For immunofluorescent double-staining, anti-NOTCH3, 1:200 (Abcam), SMA, 1:100 (mouse monoclonal, M0851, Dako or rabbit monoclonal, Clone SP171, Spring Bioscinece, CA, USA), CD34, 1:100 (mouse monoclonal, NCL-L-END, Leica Biosystems, Wetzlar, Germany) and Cytokeratin, 1:100 (mouse monoclonal, Clone AE1/AE3, M3515, Dako) were used as a primary antibody. For antigen retrieval, the sections were treated with Tris buffer (pH = 7.4) containing 0.1 mg/ml trypsin for 30 min at 37°C for CD34 antibody. Alexa Fluor 488 goat anti-rabbit IgG (A11008, Invitrogen, CA, USA) and Alexa Fluor 594 goat anti-mouse IgG (A11005, Invitrogen) were used as secondary antibody. DAPI was used for nuclear staining. The immunofluoroscent images were captured and analyzed using Axioskop2 plus microscope (Carl Zeiss, Jena, Germany).
+ Open protocol
+ Expand
3

Xenograft Model of Breast Cancer

Check if the same lab product or an alternative is used in the 5 most similar protocols
Twelve specific pathogen-free BALB/c nude mice (4–6 week-old, 20 ± 2 g) [Beijing Vital River Laboratory Animal Technology Co., Ltd., Beijing, China, SCXK (Beijing) 2015–0001] were numbered with body weight as a parameter and randomly assigned into two groups (n = 6). The stably transfected 4 × 106 MCF-7 cells by si-SNHG3 or Scramble siRNA were dispersed by 2 mL saline and injected subcutaneously into the right axilla of mice. Tumor volume was measured every 5 days and every 3 days after the 20th day. Mice were suffocated to death by CO2 35 days later. The tumors were taken out and weighed for immunohistochemistry, with every step following the guidance in a literature report [20 (link)]. Primary antibodies used in the immunohistochemistry were anti-Notch1 (1/200, ab8925, Abcam), anti-Notch2 (1/200, ab8926, Abcam) and anti-Notch3 (5 μg/mL, ab23426, Abcam), as well as the secondary antibody (1:1000, ab150117, Abcam) labeled by HRP.
+ Open protocol
+ Expand
4

Notch3 and Bcl-2/Bax Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
For Western blot analysis, the treated cells were washed twice with ice-cold PBS and incubated in a cell lysis buffer (Beyotime Institute of Biotechnology, Shanghai, China) containing 1% phenylmethylsulfonyl fluoride (PMSF), a protease inhibitor, for 15 min at 4°C. Standard sodium dodecyl sulfate (SDS) sample buffer was added to the protein products, which were boiled for 10 min and centrifuged at 12,000×g for 10 min at 4°C. The sample proteins were then separated by SDS-polyacrylamide gel electrophoresis (PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, Massachusetts, USA), which was blocked using 5% skim milk for 2 h at room temperature, and incubated with the specific antibodies against Notch3 and NICD3 (ab23426; Abcam, Cambridge, UK, 1: 5000) and anti-Bcl-2 and anti-Bax antibodies (YM3041 and YT0459 respectively; Immunoway, USA, 1: 1000) for one night. Mouse antibodies against β-actin were purchased from ZSGB-BIO (Beijing, China). Horseradish peroxidase (HRP)-conjugated IgG was used as the secondary antibody. Western blot analysis of β-actin on the same membrane served as the loading control. The protein bands were densitometrically analyzed using ImageJ software. All experiments were performed in triplicate.
+ Open protocol
+ Expand
5

Western Blot Analysis of Apoptosis Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The protein of treated ATDC5 cells was lysed using lysis buffer (Promega) supplemented with protease inhibitors (Roche, Mannheim, Germany). Each protein sample was quantified using the BCA™ Protein Assay Kit (Pierce, Appleton, WI, USA). Then, proteins were separated by SDS-PAGE and were blotted onto polyvinylidene difluoride membranes, followed by blocking with 5% non-fat milk. The blocked membranes were respectively incubated with anti-Bcl-2-associated X protein (Bax, ab182733), anti-B cell lymphoma-2 (Bcl-2, ab196495), anti-pro caspase-3 (ab90437), anti-cleaved caspase-3 (ab49822), anti-p65 (ab16502), anti-phosphorylated p65 (p-p65, ab86299), anti-inhibitor of nuclear factor κB α (IκBα, ab32518), anti-phosphorylated IκBα (p-IκBα, ab133462), anti-Notch1 (ab52627), anti-Notch2 (ab137665), anti-Notch3 (ab23426), anti-GAPDH (ab181603) (all Abcam, Cambridge, UK), anti-pro caspase-9 (9508), anti-cleaved caspase-9 (9509) (both Cell Signaling Technology, Beverly, MA, USA), or anti-PDCD4 (sc-376430; Santa Cruz, Santa Cruz, CA, USA) at 4 °C overnight. Then, after rinsing thrice, membranes were incubated with secondary antibodies marked by horseradish peroxidase for 1 hr at room temperature. After rinsing again, the bands on the membranes were visualized by ECL detection systems (Sigma-Aldrich).
+ Open protocol
+ Expand
6

Analyzing Protein Localization and Interactions

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blotting was performed as previously described (37 (link)), while details for the antibody dilutions, enhanced chemiluminescence, and imaging are described in Table S9. Transiently overexpressed RFP- or GFP-tagged proteins were used for analysis of localization and interactions by confocal microscopy or fluorescence-lifetime imaging, whereas proximity ligation assay was used to show protein interactions utilizing antibodies targeting endogenous NOTCH3 (A-6 sc-515825; Santa Cruz Biotechnology and ab23426; Abcam) and/or PIM1 (H00005292-M16, clone 6A2; Novus Biologicals), as previously described (6 ). Image and correlation analyses were performed by ImageJ (1.48s; Fiji, Wayne Rasband, National Institutes of Health).
+ Open protocol
+ Expand
7

Niclosamide Induces Notch Pathway Inhibition

Check if the same lab product or an alternative is used in the 5 most similar protocols
Niclosamide was obtained from Sigma-Aldrich (St. Louis, MO, USA). 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT; also known as thiazolyl blue and methylthiazolyldiphenyl tetrazolium bromide) was purchased from Sigma-Aldrich. The Annexin V-FITC Apoptosis Detection kit was purchased from Vazyme Biotech (Nanjing, China). Dimethyl sulfoxide (DMSO) was obtained from BioSharp (Hefei, China). The primary antibodies, rabbit polyclonal anti-Notch1 (ab27526), rabbit polyclonal anti-Notch2 (ab8926), rabbit polyclonal to anti-Notch3 (ab23426) and rabbit polyclonal anti-Hey1 (ab22614) were purchased from Abcam (Cambridge, UK). Mouse anti-β-actin monoclonal antibody (TA-09) was purchased from ZSGB-BIO (Beijing, China). The secondary antibodies, peroxidase-conjugated AffiniPure goat anti-rabbit IgG (ZB-2301) and peroxidase-conjugated AffiniPure goat anti-mouse IgG (ZB-2305), were purchased from ZSGB-BIO.
+ Open protocol
+ Expand
8

Western Blot Analysis of Cell Signaling

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total cell lysates from cells were prepared using ProteoJET™ Mammalian Cell Lysis Reagent according to the manufacturer’s instructions (Thermo Scientific, Rockford, IL, USA), and protein concentrations were determined using the BCA method. Specific antibodies to JAG2 (ab109627), PRAF2 (ab53113), NICD (ab83232), E-cadherin (ab1416), vimentin (ab92547), CD63 (ab59479), CD81 (ab79559), NOTCH1 (ab52627), NOTCH2 (ab8926), NOTCH3 (ab23426), NOTCH4 (ab184742) and β-actin (ab8226) were purchased from Abcam (Cambridge, UK).
+ Open protocol
+ Expand
9

Quantifying NOTCH3 Expression in Vascular Smooth Muscle Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
For flow cytometry of NOTCH3, SMCs were harvested at the developing stage of day 12 for LM- and PM-SMCs and day 14 for NE-SMCs and at the mature stage after 30 days of serum-contained medium culture. SMCs transfected once or twice with specific Notch3 siRNA or scrambled siRNA were harvested 48 h after transfection. SMCs were fixed using the Cytofix/Cytoperm Fixation/Permeabilization kit (BD Biosciences) and stained according to the kit manual. Fixed SMCs were stained with rabbit polyclonal anti-NOTCH3 antibody 1:200 (ab23426; Abcam) for 1 h at 4°C, followed by two washes with the Cytowash buffer, and then incubated with a goat anti-rabbit Alexa Fluor 488 antibody for 30 s at 4°C, followed by two washes with the Cytowash buffer. Rabbit IgG isotope control (Sigma) was used. Cells were then resuspended in phosphate-buffered saline (PBS) and measured with Cyan ADP cell analyzer. Flow cytometric data were analyzed with FlowJo vX software.
+ Open protocol
+ Expand
10

Western Blot Analysis of Notch Pathway Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell extracts were prepared in lysis buffer (RIPA Cell Lysis Buffer 5×, RP05-100, Visual Protein, Taiwan) that contained a 1× protease inhibitor mixture (4693132001, Roche) and 1 mM phenylmethylsulfonyl fluoride. For western blot analysis, cell extracts were subjected to sodium dodecyl sulfate–polyacrylamide gel electrophoresis. The electro-transferred membrane (Protran ™ Nitrocellulose membrane NBA 085C001EA) was then incubated with the secondary antibody (92668072, IRDye® 680RD Donkey anti-Mouse IgG; 92632211 IRDye® 800CW Donkey anti-Rabbit IgG; LI-COR Biosciences) and was developed with a LI-COR Odyssey system (LI-COR). We used Notch-1 (1:1000, ab8952, Abcam), Notch-3 (1:1000, ab23426, Abcam), Notch-4 (1:1000, ab199295, Abcam), phospho-AMP-activated protein kinase (AMPK; 1:500, E-ab-21121, Elabscience), c-Myc (1:1000, E-ab-30975, Elabscience), Hes7 (1:1000, E-ab-18076, Elabscience), RBX1 (1:1000, E-ab-18881, Elabscience), FBXW7 (1:1000, E-ab-11064, Elabscience), DLL1 (1:1000, E-ab-66262, Elabscience), Hes1 (1:200, sc166410, Santa Cruz) and Hey L (1:200, sc81294, Santa Cruz) to detect Notch pathway associated protein markers. The KLF10 antibody was purchased from Abcam (1:1000, ab73537). β-Actin antibody (1:1000, E-ab-20094, Elabscience) at a 1:3000 dilution was used as control.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!