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7 protocols using anti c myc antibody 9e10

1

CLEC10A Immunohistochemical Staining Protocol

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Tissue sections were stained with recombinant CLEC10A as described previously [28 (link)]. Briefly, sections were deparaffinized and antigen retrieval was achieved by boiling in 0.1 M sodium citrate buffer (pH 5.0). Slides were blocked by 3% hydrogen peroxide and with TSM buffer in the presence of 0.2% BSA, 10% fetal calf serum and 0.3% Triton X-100. Tissue sections were incubated with complexed CLEC10A consisting of myc-tagged CLEC10A, streptavidin-horseradish peroxidase (HRP) conjugate (Thermo Fisher Scientific), and the biotinylated anti cmyc antibody 9E10 (Santa Cruz Biotechnology). After washing (3× for 5 min each) in TSM buffer, staining was performed with 3, 3′-diaminobenzidine chromogen solution (DAB; Dako) Nuclei were counterstained by hematoxylin. Stained tissue sections were coverslipped applying Glycergel Mounting Medium (Dako). Images were acquired using an Olympus BX43 microscope.
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2

Quantitative Western Blot Analysis

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The antibodies used were as follows: anti-c-Myc antibody (9E10, 1:1000 for IB analysis, Santa Cruz), anti-Flag antibody (F1804, 1:1000 for IB analysis, Sigma), anti-HA antibody (1:5000 for IB analysis, Covance), anti-GAPDH antibody (SC-47724, 1:1000 for IB analysis, Santa Cruz), anti-α-tubulin antibody (EPR1333, 1:10 000 for IB analysis, Epitomics), anti-HIF-2α antibody (AB199, 1:1000 for IB analysis, Abcam), anti-HIF-1α antibody (A6265, 1:1000 for IB analysis, Abclone), anti-HIF-OH antibody (3434S, 1:1000 for IB analysis, Cell Signaling).
Western blot was performed as described previously (31 (link)). The Fuji Film LAS4000 mini luminescent image analyzer was used for photographing the blots. Multi Gauge V3.0 was used for quantifying the protein levels based on the band density obtained in western blot analysis.
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3

Co-immunoprecipitation of ABCA8 and CSPG4

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pEF6-CSPG4-myc-his plasmid was purchased from Addgene (Cambridge, MA). DNA was ligated into pcDNA™3.1(+) (Thermo Fisher Scientific), amplified, and sequence confirmed. Human embryonic kidney 293T cells (ATCC) were cotransfected with human-V5-ABCA8-pcDNA3.1 and myc-CSPG4 using Lipofectamine 300 reagent (Thermo Fisher Scientific). Twenty-four hours after transfection, cells were lysed in 10 mM Tris-HCl, 0.1% Triton, 150 mM NaCl, pH 8.0, 1× protease inhibitor cocktail (Roche, Basel, Switzerland), and centrifuged at 14,000 g for 20 min at 4°C. Protein A sepharose beads (50 μl; GE Healthcare, MA) were incubated for 2 h at 4°C with 2 μg anti-V5 antibody (Invitrogen) or anti-c-myc antibody 9E10 (Santa Cruz Biotechnology, Dallas, TX). The cell lysates (500 μg) were incubated with the beads overnight at 4°C. Nonspecific binding was assessed using beads incubated without protein lysate. Beads were washed in cold homogenization buffer containing 0.4% Tween-20, and the bound proteins were detached using sample buffer containing 200 mM dithiothreitol at 100°C for 5 min. Samples were analyzed by Western blotting to detect human ABCA8 (anti-V5 [Invitrogen]) and anti-c-myc antibody (9E10) to detect tagged CSPG4.
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4

RIP Analysis of spPrp16-Myc Interacting RNAs

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A minichromosome was introduced into cells expressing spPrp16-Myc from the endogenous locus. Cells (972 or Δdcr1) transformed with the indicated constructs were grown to mid-log phase in MMAU medium at 26°C, and then fixed with 1% formaldehyde for 30 min at room temperature. After treatment with 125 mM glycine, cells were washed with PBS and resuspended in lysis buffer (50 mM HEPES-KOH, pH 7.5, 140 mM NaCl, 1% TritonX-100, 0.1% DOC, 1 mM PMSF, complete EDTA-free protease inhibitor cocktail, and 100 U/ml RNase inhibitor). Cells were then disrupted using a Multi-beads shocker (Yasui Kikai), followed by sonication with a Bioruptor (BM Equipment). After treatment with DNase (Ambion), spPrp16-Myc was immunoprecipitated using anti c-Myc antibody (9E10, Santa Cruz), and RNAs were extracted from the precipitates. RT of RNAs was performed using the plasmid-specific primers listed in S3 Table. Real-time quantitative PCR and data analyses were performed as described above in the “ChIP analysis” section. RIP analyses were conducted at least three times independently.
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5

Investigating HIF-1α Regulation and Metabolic Adaptations

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The antibodies used were as follows: anti-c-Myc antibody (9E10, 1:1000 for IB analysis, Santa Cruz), anti-HA antibody (1:5000 for IB analysis, Covance), anti-β-actin antibody (AC004, 1:20,000 for IB analysis, ABclonal), anti-HIF-1α antibody (A6265, 1:1000 for IB analysis, ABclonal), anti-GFP antibody (AE012, 1:1000 for IB analysis, ABclonal), anti-HIF-OH antibody (3434S, 1:1000 for IB analysis, Cell Signaling), anti-Arginine (glcnac) (ab195013, 1:1000 for IB analysis, Abcam), anti-His (H15, 1:500 for IB analysis, Santa Cruz), anti-Ldha antibody (A1146, 1:1000 for IB analysis, ABclonal), anti-Pkm2 antibody (GB11392, 1:1000 for IB analysis, Servicebio), anti-Vegf (GB11034, 1:1000 for IB analysis, Servicebio), anti-Slc2a1 (Glut1) antibody (GB11215, 1:100 for IF analysis, Servicebio), anti-Ki67 antibody (GB113030-2, 1:100 for IF analysis, Servicebio), anti-Insulin antibody (GB13121, 1:100 for IF analysis, Servicebio).
PX-478 (S7612) was purchased from Selleck. 6-[N-(7-Nitrobenz-2-oxa-1,3-diazol-4-yl) amino]-2-deoxy-D-glucose (2-NBDG), a glucose analog, was purchased from Invitrogen. Insulin (Mouse) ELISA Kit (KA3812) was purchased from Abnova. Alpha-Ketoglutarate Assay Kit (K677-100) was purchased from Biovision.
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6

Immunostaining Xenopus Embryos

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Immunostaining was carried out as previously described37 . Primary antibodies included: anti-HA monoclonal antibody (HA.11 Clone 16B12) (Covance), anti-GFP rabbit polyclonal antibody (Abcam), anti-c-Myc (9E10) antibody (Santa Cruz Biotechnology) and were used at 1:500 dilution. Secondary antibodies included: Alexa Fluor (AF) 594 conjugated anti-mouse IgG or anti-rabbit IgG and AF488-conjugated anti-rabbit IgG (Molecular Probes) and were used at 1:200 dilution. To stain Xenopus embryos, whole embryos were fixed by MEMFA for 1 hr and explants were mounted in Prolong Gold (Invitrogen). Digital confocal images were captured with Olympus DSU-Olympus IX81 or Olympus FV1000 confocal microscopes.
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7

Culturing Diverse Glucose-Responsive Cell Lines

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RPMI 1640 (no glucose); Dulbecco’s Modified Eagle Medium (DMEM); DMEM (high glucose, no glutamine, lysine, or arginine); sodium pyruvate; penicillin/streptomycin; foetal bovine serum and lipofectamine LTX (GIBCO-Invitrogen-Life Technologies, Carlsbad, CA). β-Mercaptoethanol, glucose, blasticidin S, ATP, forskolin, IBMX and L-amino acids (Sigma Aldrich, St. Louis, MO); hygromycin B (Roche, Basel, Switzerland); tetracycline (Fluka, St. Gallen, Switzerland); puromycin (InvivoGen (San Diego, CA); anti-cmyc 9E10 antibody (Santa Cruz, Dallas, Texas) and goat-anti mouse-PE antibody (GIBCO-Invitrogen-Life technologies, Carlsbad, CA); SYTOX Red and Fluo-4 AM (Molecular Probes, Eugene, Oregon). GLUTag cells were kindly provided by Dr. Daniel J. Drucker (Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, ON, Canada), MIN6 cells by Dr. Jun-ichi Miyazaki (Osaka University, Osaka, Japan) and INS-1 (832) cells by Dr. Christopher Newgard (Sarah W. Stedman Nutrition and Metabolism Center, Duke University, Durham, NC).
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