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10 protocols using β catenin

1

Western Blot Analysis of Cell Signaling Proteins

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Protein was loaded onto polyacrylamide gel and moved onto PVDF membranes, which were kept in blocking buffer for 1 hour, and then placed with primary antibodies overnight at 4 °C (ANGPT2, 1:200, Abcam, N-cadherin, Vimentin, E-cadherin and β-catenin 1:200, Boster Biological Technology and β-actin, 1:4,000, Santa Cruz). Membranes were then placed in incubation with secondary antibody (1:5,000, Santa Cruz). β-actin served as control. Protein was quantified through the use of ImageJ (NIH, USA). Final data was represented as an average of 3 independent experiments.
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2

Immunohistochemical Analysis of Colonic Tissue

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For immunohistochemical examination, paraffin-embedded colonic sections were deparaffinized in xylene and hydrated in gradient alcohol. Then, antigen retrieval was performed by heating in pre-boiling buffer in a microwave for 10 min. Next, slides were incubated in 3% hydrogen peroxide solution for 15 min to quench endogenous peroxidase activity and then blocked by 10% goat serum in PBS (pH 7.4) for 15 min at room temperature. Subsequently, slides were incubated with primary antibodies in a humidified chamber at 4°C overnight: cyclooxygenase-2 (COX-2; 1:300), inducible nitric oxide synthase (iNOS; 1:300), β-catenin (1:200), E-cadherin (1:200), N-cadherin (1:200; BOSTER, Wuhan, China), proliferating cell nuclear antigen (PCNA; 1:100), Vimentin (1:300), Snail (1:100; Bioss, Beijing, China), or p53 (1:50), p-p53 (1:50; Santa Cruz, Dallas, TX, USA). After incubation with biotinylated goat anti-rabbit secondary antibody (1:200; Beyotime, Jiangsu, China) and avidin-biotin-horseradish peroxidase (HRP; Beyotime, Jiangsu, China), slides were visualized using diaminobenzidine (DAB), counterstained with haematoxylin and observed under an optical microscope.
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3

Histological and Immunohistochemical Analysis of Hair Follicles

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Harvested samples were fixed in 4% paraformaldehyde (PFA) and embedded in paraffin. Sections were cut at 5um and stained with hematoxylin and eosin (H&E) for 3min. The Adobe Photoshop CS3 ruler tool was used to analyze follicle width. For immunostaining, antigen retrieval was carried out by microwaving the tissues for 10 min in boiled citrate acid plus sodium citrate buffer. Then samples were incubated with primary antibodies against WNT10b (Goat, 1:100, Santa Cruz, CA, USA), β-catenin (Rabbit, Boster, Wuhan, China), Lef1 (Goat, 1:100, Santa Cruz, CA, USA), BrdU (mouse, 1:100, Sigma-Aldrich, St. Louis, MO, USA), Ki67 (mouse, 1:100, Sigma-Aldrich, St. Louis, MO, USA), AE15 (1:2, gift), CD34 (Rabbit, Boster, Wuhan, China), Sox2 (Goat, 1:100, R&D Systems, MN, USA), or β1-integrin (Rabbit, 1:100, Bioss, Beijing, China) overnight at 4°C and with Cy3-labeled fluorescent secondary antibodies (Beyotime, Nantong, China) for 2 hrs at 37°C. Sections were counterstained with DAPI (1:1000, Sigma-Aldrich, St. Louis, MO, USA). Fluorescence was checked by fluorescence microscopy (Nikon, Japan). The relative intensity ofβ1-integrin protein was measured using Image J.
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4

Immunofluorescence Assay for Cell Markers

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Cells cultured on cover slide were washed with PBS and fixed in acetone for 10 min at 4 °C, followed by being incubated with primary antibodies: anti-Ki67 (mouse, 1:100; Sigma-Aldrich, USA), anti-BrdU (mouse, 1:100; Sigma-Aldrich, USA), and β-catenin (Rabbit, 1:100; Boster, Wuhan, China), anti-E-cadherin (Rabbit, 1:100; Boster, Wuhan, China), relevant secondary antibodies and counter-stained with DAPI (1:1000; Sigma-Aldrich, USA). Fluorescence was detected by fluorescence microscopy (Nikon, Tokyo, Japan).
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5

Western Blotting Antibody Validation

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Western blotting was carried out as previously described [24 (link)]. The primary antibodies were purchased from Bethyl Laboratories (QKI), Cell Signaling Technology (E-cadherin, N-cadherin, Vimentin, Snail, Slug, p-β-catenin (Ser33/37/Thr41) and p-GSK3β (Ser9)), Santa Cruz Biotechnology (β-catenin, α-tubulin, β-actin, c-myc, cyclin D1, MMP2, DKK3, DVL1, DVL3, GSK3β), Boster (GAPDH) and Sigma (flag).
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6

Immunofluorescence Analysis of Tight Junction Proteins

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Rabbit antibodies specific to LC3 (L7543), ZO-1 (SAB5700645), occludin (SAB5700784), claudin 11 (ABT148), and pSQSTM1/P62 (SAB5700845) were purchased from Sigma-Aldrich (St. Louis, MO, USA). Rabbit antibodies specific to CX43 (A00599), N-cadherin (BA0673), and β-catenin (BA0426) were purchased from Boster (Wuhan, China). In addition, 3-methyladenine (3-MA) (A8780) was purchased from Solarbio (Beijing, China).
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7

Western Blot Analysis of EMT Markers

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Protein lysates were isolated using lysis buffer (Beyotime Biotechnology, Shanghai, China) and quantified by the bicinchoninic acid method (Thermo Fisher Scientific, Waltham, MA, USA). Protein lysates (20 μg) were fractionated onto 10% SDS-PAGE (Sangon) and transferred onto polyvinylidene difluoride (PVDF) membranes (Millipore, Whatman, Germany). PVDF membranes were blocked with 5% skim milk-TBS at 4°C overnight, incubated with specific primary antibody solutions at room temperature for 1 hour, and incubated with HRP goat anti-rabbit/ mouse IgG (1:20,000) at room temperature for 40 minutes. Enhanced chemiluminescence system (Millipore, Billerica, MA, USA) and Image-Pro Plus 6.0 software analysis system (Media Cybernetics, Inc., Bethesda, MD, USA) were used for protein blot quantitation. Antibodies against E-cadherin (1:1,000), N-cadherin (1:400), MDM2 (1:1,000), vimentin (1:1,000), β-catenin (1:5,000), Snail (1:500), Slug (1:1,000), Smad2/3 (1:2,000), p-Smad2 (1:1,000), p-Smad3 (1:2,000), and secondary antibodies were purchased from Boster Biotechnology (Wuhan, China). GAPDH antibody (1:10,000) was purchased from Yasunari Biological Engineering (Shanghai, China).
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8

Immunohistochemical Analysis of Extracellular Matrix

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The L5-L6 segments were sliced along the median sagittal plane. After pre-treatment with 5% BAS blocking solution, sections were incubated in diluted antibody (dilution ratio: Coll2 1: 150; MMP-3 1: 120; Aggrecan 1: 150; β-catenin 1: 100) (Boster, Wuhan, China) separately at 4 °C overnight. Then, sections were incubated at 37 °C for 30 min with biotin-coupled secondary antibody diluted 1:150 and SABC. DAB colouration solution was formulated and dropped on sections and sections were observed with a Digital Image Analyzer. All sections were semi-quantitatively analyzed by Image-Pro Plus 6.0 software, and the average optical density was measured on the images at 400× magnification.
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9

Western Blot Analysis of Cell Signaling Proteins

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All the cells were gathered and total proteins were extracted using RIPA lysis buffer supplemented with protease inhibitor Cocktail (Roche, Switzerland). Protein concentrations were calculated by using BCA protein assay kit (Beyotime, China). Equivalent amounts of protein samples (50 μg) were separated by 10 % sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and then transferred to polyvinylidene fluoride (PVDF) membranes. Nonspecific binding was blocked by incubating the PVDF membranes with 5 % bovine serum albumin (BSA) (Sigma-Aldrich, USA) for 2 h at room temperature. The membrane was then incubated with primary antibodies included p53 (1/1000) (Cell Signaling Technology, USA), p21 (1/2000) (Cell Signaling Technology, USA), Cyclin D1 (1/2000) (Affinity, USA), CDK4 (1/1000) (Affinity, USA), CDK6 (1/2000) (Affinity, USA), E-cadherin (1/1000) (BD Biosciences), β-catenin (1/500) (Boster, China), Vimentin (1/500) (Boster, China), ZEB1 (1/1000) (Cell Signaling Technology, USA), GAPDH (1/500) (Boster, China) and α-tubulin (1/500) (Boster, China) at 4 °C overnight. After several washes, the membranes were incubated with corresponding secondary antibody and detected by enhanced chemiluminescence (ECL) assay kit (Millipore, USA).
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10

Western Blot Analysis of Cell Signaling Proteins

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3T3-L1 cells were washed three times with PBS before adding RIPA (Beyotime, Shanghai, China) supplemented with protease inhibitors (Pierce, Rockford, IL, USA) at 4 °C. We scraped the lysed cells and then centrifuged (rpm) at 4 °C for 10 min. Supernatant protein concentration was determined by BCA protein assay kit (Cwbio, Beijing, China). A 1/4 volume of 5× loading buffer (Cwbio, Beijing, China) was added to an aliquot of the supernatant, and a 20 µg protein sample was separated using a 12% SDS-polyacrylamide gel. After electrophoresis, the gel was transferred to a polyvinylidene fluoride (PVDF) membrane (CST, Boston, MA, USA) using a current of 250 mA. After 2 h, the membrane was removed and placed in 5% skim milk for 2 h in room temperature. The membrane was then incubated with primary antibody at 4 °C overnight and then incubated with secondary antibody (Boster, Wuhan, China) for two hours in room temperature. Finally, the signals were detected by a gel imaging system (Bio-Rad, CA, USA) and analyzed by Image Lab (Bio-Rad, CA, USA) software. Primary antibodies were used against Cyclin E, Cyclin D1, p27, Bcl-2, Bax, and Caspase-3 (Santa Cruz, Dallas, TX, USA); against Cleaved Caspase-3 (abways, Shanghai, China), against β-actin (CWBio, Beijing, China), and against β-catenin (Boster, Wuhan, China).
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