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Iodoacetamide ia

Manufactured by Merck Group
Sourced in United States

Iodoacetamide (IA) is a laboratory reagent used for the modification and analysis of proteins. It functions as an alkylating agent, specifically targeting and reacting with the sulfhydryl (thiol) groups of cysteine residues within protein structures. This chemical modification can be utilized in various analytical techniques to study protein structure, function, and interactions.

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4 protocols using iodoacetamide ia

1

Gel-Based Proteome Sample Preparation

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The equal protein from cell lysates was separated on a 12.5% SDS-polyacrylamide gel. Then, the protein in gel was cut into small pieces (~0.5–1 mm3). A small gel particle size facilitates the removal of SDS and coomassie by 25 mM NH2HCO3. Next, protein in gels was reduced and alkylated by dithiothreitol (DTT) for 30 min at 37 °C and iodoacetamide (IA) (Sigma-Aldrich, Darmstadt, Germany) for 30 min at room temperature in the dark, respectively. These samples were further quenched with DTT for 15 min at room temperature before incubating with trypsin at a ratio of 1:50 at 37 °C for 16 h. After digestion, tryptic proteins were extracted from the gels by adding 30 µL of 50% CH3CN/1% trifluoroacetic acid (TFA). Next, the peptides from the supernatant were removed and collected in a clean LoBind tube and the extracts were concentrated on speedvac. Finally, these digested proteins were resuspended in 0.1% formic acid and subjected to LC-MS/MS (Thermo Scientific, Waltham, MA, USA). The data from mass spectrometry were analyzed by Proteome Discoverer version 2.1softwere (Thermo Scientific, Waltham, MA, USA).
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2

Rodent Model of Functional Dyspepsia

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A previously established rodent model of FD was used in this experiment, described as follows [24 (link)]: After a three-day period of acclimation, ten-day-old pups were randomly divided into two groups: one group (FD) was given a gavage of 0.2 ml of 0.1% iodoacetamide (IA, Sigma, US) in 2% sucrose (Sigma,US), while the other group (control) was given only 0.2 ml of 2% sucrose. All pups were sent to their mother rats immediately after gavage and fed normally until they were seven weeks old. During the course, the animals were monitored daily for their overall behaviors, including food intake, activity level, alertness and feces.
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3

CCR2 Radioligand Binding Assay

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[3H]-CCR2-RA-[R] (specific activity 59.6 Ci
mmol–1) was custom-labeled by Vitrax (Placentia, CA), and
[35S]GTPγS (specific activity 1250 Ci mmol–1) was
purchased from PerkinElmer (Groningen, The Netherlands). The CCR2 ligands
CCR2-RA-[R] and JNJ-27141491 were synthesized as previously
described.53 (link),54 (link)Human CCL2 was purchased from PeproTech (Rocky Hill, NJ). Bovine serum albumin (BSA,
fraction V), guanosine 5′-diphosphate (GDP), and iodoacetamide (IA) were from
Sigma Aldrich (St. Louis, MO, USA). Pierce bicinchoninic acid (BCA) protein assay kit
and coelenterazine (CTZ-n) were obtained from Thermo Fisher Scientific (Rockford, IL).
Polyethyleneimine (PEI) was purchased from Polysciences Inc. (Warrington, Pennsylvania).
Tango CCR2-bla osteosarcoma cells stably expressing human CCR2b
(U2OS-CCR2) were obtained from Invitrogen (Carlsbad, CA). Chinese hamster ovary (CHO)
cells were kindly provided by Hans den Dulk (Leiden University, the Netherlands) and
originally obtained from ATCC. All other chemicals were from standard commercial
sources.
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4

Protein C Activation Mechanism Investigation

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Dithiothreitol (DTT) and iodoacetamide (IA) were from Sigma Aldrich (St. Louis, Missouri, United States). Chromogenic substrate S-2366 was from Werfen (Barcelona, Spain). Biotin-NHS, human α2M and anti-α2M antibody were from Calbiochem (La Jolla, California, United States). Human PC,27 APC,28 (link) monoclonal antibody to the light chain of PC (C3)29 (link),30 (link) and PC-immunodepleted plasma were prepared as described earlier.27
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