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27 protocols using anti pd l1

1

Restoring HBV-Specific CD8+ T-Cell Function

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PBMC were seeded in 96 well plates at a concentration of 1x106 cell/mL in complete T-cell medium plus 10% HI-FBS. Cells were stimulated with HBVcore18-27 or HBVpol455-63 for ten days in presence of IL-2 (25 IU/mL) or IL-15 (10ηg/Ml) or IL-2 plus anti-PD-L1 (10 μg/mL), (eBioscience, San Diego, CA) or IL-15 plus anti-PD-L1. anti-PD-L1 mAbs were added 2h before the stimulation with the specific peptide. IL-2 and IL-15 were administered 48 and 96h post Ag-stimulation. The intensity of proliferation was tested at day-10 as the percentage of CD8+/Pentamer+ cells out of total CD8+ cells. The diverse treatments were assessed in representative NUC-treated CHBe(-) patients with different degree of restoration score according to the logistic regression equation showed in Figure S1, recently published by our group28 (link)
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2

Multiparametric Tissue Analysis Protocol

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Histologic analysis was performed on snap frozen tissues that were fixed in acetone, blocked with 10% FCS, and stained with anti-active caspase-3 (BD Biosciences), anti-cleaved caspase-8 (Cell Signaling Technology), anti-PD-L1, anti-LY6C, anti-LY6G (all eBioscience), and anti-BAFF (R&D) antibodies. Fluorescent images were taken with an Axiocam 503 color microscope (ZEISS) and quantified using ImageJ. Conventional histology images were taken using the Brightfield microscope.
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3

Comprehensive Immunophenotyping of T-cells and DCs

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T-cell suspensions were isolated from the spleen and lymph nodes, and were stained with antibodies against the following cell surface antigens: APC-conjugated anti-mouse CD3, FITC-conjugated anti-mouse CD4, PE-conjugated anti-mouse CD8, PE-conjugated anti-mouse Gr-1, APC-conjugated anti-mouse CD11b, PE-conjugated anti-mouse TCR (eBioscience), PE-conjugated anti-mouse PD-1, and PE-conjugated anti-mouse CD152 (CTLA-4; BD Bioscience, San Jose, CA, USA). Tregs were detected from the spleen and lymph nodes using a Mouse Regulatory T-Cell Staining Kit (eBioscience) according to the manufacturer's instructions. DCs were isolated from the bone marrow and cells were incubated with FITC-conjugated anti-CD86, APC-conjugated anti-CD11C, PE-conjugated anti-MHC-II, FITC-dextran, PE-conjugated anti-CCR7, and anti-PD-L1 (eBioscience). The cells were analyzed by FACS, and the acquired data was performed with FlowJo Software, version 9.1 (Tree Star, San Carlos, CA, USA).
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4

Immortalized DC Line Response to MSNs

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The immortalized immature DC line JAWS II was purchased from ATCC. JAWS II cells were seeded onto a cover slip (Paul Marienfeld GmbH & Co. KG, Lauda-Königshofen, Baden-Württemberg, Germany) and incubated with 250 μg/mL of rhodamine-preloaded MSNs for two days. Cells were fixed with 4% formaldehyde and permeabilized with 0.01% Triton X-100. Cells were stained with Alexa-Fluor488-conjugated phalloidin (Life Technologies, Eugene, OR, USA) and DAPI (Sigma-Aldrich, St. Louis, MO, USA). Fluorescence images were acquired using a Zeiss Observer D1 fluorescence microscope (Carl Zeiss, Oberkochen, Baden-Württemberg, Germany). The activation of JAWS II cells by CM-MSNs was determined by flow cytometry. JAWS II cells (5 × 106 cells) were seeded in 12-well plates and incubated with 100 or 200 μg/mL of CM-MSNs for two days. Cells were stained with anti-CD40 (BD562846), anti-CD80, anti-CD86, anti-MHC I (BD742859), anti-MHC II and anti-PD-L1 (12-5982-82, eBioscience, San Diego, CA, USA). Stained cells were analyzed by a BD FACSVerse flow cytometry.
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5

Blocking Cytokines and Checkpoint Inhibitors in T-cell Assays

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Cells were thawed, washed and reconstituted in AIM V serum-free medium (Life Technologies, Oslo, Norway) containing 0.1% human serum albumin. After an overnight rest, cells were pulse-labelled with carboxyfluorescein diacetate succinimidyl ester (CFSE, Life Technologies) at a concentration of 2 μM for 5 minutes. The following blocking antibodies were added to parallel culture wells at a final concentration of 10 μg/mL: anti-IL-10 (R&D Systems, MN, USA; clone 23738), anti-TGF-β (R&D; clone 1D11), anti-PD-L1 (eBioscience, CA, USA; clone MIH1), and anti-HVEM (R&D; clone 94801).
After a 30 minute incubation, cultures were stimulated with either Gag or Env 15-mer overlapping peptide panels (NIH AIDS Research and Reference Reagent Program, MD, USA) at a final concentration of 2 μg/mL/peptide. Staphylococcal Enterotoxin B (SEB, Sigma-Aldrich, MO, USA) at a final concentration of 0.5 μg/mL was used as a positive control.
Cells were cultured at 37°C in 5% CO2 for 5 days, harvested, and stained with the following fluorochrome-conjugated antibodies: CD3 V450, CD8 APC-H7, HLA-DR BV605, CD45RA APC (all BD) and CD25 PE (Biolegend). 7-aminoactinomycin D (7-AAD, BD) was added for dead cell exclusion. Flow cytometry data were acquired on a BD FACS Canto II with BD Diva 6.1 software, and analyzed in FlowJo X (FlowJo LLC, OR, USA).
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6

Whole Blood Antigen Response Assay

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Whole blood cell cultures were performed to determine the in vitro responses to antigens. Briefly, whole blood was diluted 1:1 with RPMI1640 medium supplemented with penicillin/streptomycin (100 U/100 mg/ml), L-glutamine (2 mM), and HEPES (10 mM; all from Invitrogen) and distributed in 12-well tissue culture plates (Costar). The cultures were then stimulated with ESAT-6, CFP-10, or anti-CD3 or with medium alone in the presence of CD49d/CD28 at 37°C for 18 h. Brefeldin A (10 µg/mL) was added after 12 h. After 18 h, centrifugation, washing, and red blood cell lysis was performed. The cells were fixed using cytofix/cytoperm buffer (BD Biosciences, San Jose, CA) and stored at −80°C. For neutralization experiments, whole blood was cultured in the presence of anti-IL-27 (5 μg/ml), anti-TGFβ (5 μg/ml) (R&D Systems, Minneapolis, MN), anti-PDL-1 (5 μg/ml) (eBiosciences, San Diego, CA), and anti CLTA-4 (5 μg/ml) (Ancell), or isotype control antibody (5 μg/ml) (R&D Systems) at 37°C for 6 h following which PPD was added and Brefeldin A (10 µg/ml) was added after 1 h. The cells were then cultured for a further 16 h.
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7

Multicolor Flow Cytometry Analysis of PBMC

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The peripheral blood mononuclear cells were isolated by centrifuging the whole blood with an EZ-Sep TM (Dakewe, Shenzhen, China) lymphocyte separation tube. The cells were stained with corresponding anti-human FCM antibodies which include anti-PD-1 (eBioscience), anti-PD-L1 (eBioscience), anti-CD8 (eBioscience), anti-CD4 (eBioscience), anti-CD3 (BioLegend), anti-CD14 (eBioscience), and anti-human CD56 (eBioscience). One test contains 10,000 cells which were incubated for 30 min with corresponding antibodies and analyzed by FACSAria II. The gated strategy is shown in Figure S1.
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8

Multiparametric Immunophenotyping of DCs

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Fluorescein isothiocyanate (FITC)-conjugated monoclonal antibodies (mAbs) to CD86, CD1a, PD-L1 (CD274), IFN-γ (all anti-human), phycoerythrin (PE)-conjugated mAbs to CD80, CD83 and CD25, APC-conjugated HLA-DR (all anti-human), anti-human Alexa Fluor 700-CD4 were from BD Biosciences, and PE-conjugated mAb to anti-human CD40 was from Becton Dickinson. Human Foxp3-APC, anti-PD-L1 and isotype control were from eBioscience. CD14 magnetic beads, T cell isolation kit II, GM-CSF and IL-4 were from Miltenyi Biotec. Anti-β-ACTIN and anti-PGE2 antibodies were purchased from Sigma-Aldrich. Anti-SHH, anti-GLI1, anti-NUMB, anti-Ser9 phospho-GSK-3β, anti-NICD (Cleaved Notch1), anti-Ser2448 phospho mTOR, anti-Tyr458 phospho p85 and anti-Ser536 phospho NF-κB p65 were purchased from Cell Signaling Technology. Anti-COX-2 was from Calbiochem. Anti-Notch 2 intracellular domain and anti-Notch 4 -C-terminal antibodies were from Abcam. HRP conjugated anti-rabbit IgG and anti-mouse IgG was obtained from Jackson ImmunoResearch.
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9

Multiparameter Flow Cytometry Analysis

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Cells were stained with antibodies from Biolegend (anti-CD4, RM4-5; anti-CD8, 53-5.8; anti-CD11b, M1/70; anti-CD11c, N418; anti-Ly6G, 1A8; anti-Ly6C, HK1.4; anti-Gr1, RB6-8C5; anti-MHC-II, M5/114.15.2; anti-CD40, 3/23; anti-CD80, 16-10A1; anti-CD86, GL-1; anti-CX3CR1, SA011F11; anti-PDL1, MIH7; anti-IL4, 11B11; anti-CD44, IM7; anti-CD62L, MEL-14; anti-Ki67, 11F6; anti-CD25, PC61; anti-H2Kb, AF6-88.5; anti-H2Kd, SF1-1.1), eBioscience (anti-FoxP3, FJK-16S). For intracellular staining, FoxP3/Transcription Factor Staining Buffer Set was used (eBioscience, 00-5523-00). Flow cytometry was determined by Canto-II instrument (BD) and analyzed by FlowJo v10.
For cell sorting, CD11b+ cells were pre-enriched with anti-CD11b microbeads (Miltenyi Biotec, 130-097-142). Enriched CD11b+ cells were stained with anti-CD11b and anti-Gr-1 for FACS by using an MoFlo Astrios system (Beckman Coulter).
Detailed reagents information is listed in Table S2.
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10

Tumor Immune Checkpoint Inhibitor Assay

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Tumor cells were isolated from portions of lung tumors resected from patients for clinically indicated reasons. The tumors were disaggregated for 2 hours in a collagenase-DNase solution in the presence of complete protease inhibitors (Roche). The disaggregated tumor cells were then counted and seeded in 96-well plates at 200,000 cells per well. PBF-509 (Palobiofarma; 1 μM), anti-PD-L1 (eBioscience; 10 μg/ml), anti-PD-1 (eBioscience; 10 μg/ml), and rh-IL-2 (6000 U/ml) were also added at the time of seeding. After 72-hour incubation, the supernatant was collected for γ-interferon ELISA (R&D Systems), which was performed in accordance with manufacturer's instructions.
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