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8 protocols using kinase glo plus luminescent kinase assay kit

1

Assay of PEDV nsp13 ATPase Activity

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The Kinase-Glo Plus Luminescent Kinase Assay kit (Promega, United States) was used to detect the ATPase activity of PEDV nsp13. In brief, the purified recombinant proteins in reaction buffer (40 mM Tris-HCl at pH 7.5, 50 mM NaCl, 2 mM Mg2+, 80 μM ATP, and 0.2 μM NTPase) were added to a 96-well black plate in the presence of compounds or DMSO to a total volume of 50 μl. Apyrase from potatoes (Sigma-Aldrich, United States) was used as a positive control enzyme. PEDV N protein was used as a negative control enzyme. The plate was then incubated in a 37°C incubator for 20 min. At the end of the reaction, 50 μl of Kinase-Glo reagent was added to the reaction mixture. After mixing and incubating at room temperature for 2 min, luminescence of each well was measured using a PerkinElmer EnSpire Multimode Plate Reader.
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2

Analyzing DNA Damage Signaling Pathways

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HEK 293T, HeLa, and U-2 OS cell lines were from ATCC. Human glioma cell lines M059K and M059J were a gift from Dr. Aziz Sancar's lab. Cells were maintained respectively in either DMEM or RPMI 1640 or McCoy's 5a medium (Invitrogen, CA). JQ1 (Structural Genomics Consortium) was re-suspended in DMSO to a final concentration at 5 mM. The Superfect transfection reagent was from Qiagen. Antibodies for DNA-PKcs, phospho-ser63 c-Jun, and Bax were from Cell Signaling. Antibodies of Tip60 and γTyr142H2AX were from Millipore. Antibodies for γH2AX (S139, ab22551), H2A K5ac (ab45152), H2AX (ab11175), and DNA-PKcs pT2609 (ab4194) were from Abcam. FLAG M2 was from Sigma. DNA-PKcs pT2609 for IB was a gift from Dr. Dale Ramsden. DNA-PKcs peptide substrate and Kinase-Glo Plus Luminescent Kinase Assay kit were from Promega.
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3

NVP-BEZ235 and Synthetic Compounds: Kinase Assays

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NVP-BEZ235 was purchased from Selleckchem (S1009). Compounds 1–3 were synthesized in the laboratory at Xuanzhu Pharma, and the synthetic routes of the three compounds are shown in Figures 57, respectively. In addition, detailed synthetic routes have been described in the patents.16 –18 All three compounds were characterized by nuclear magnetic resonance (NMR) and mass spectrometry (MS) and their structures further qualified. Other materials – β-cyclodextrin, HEPES, Tween 20, penicillin, streptomycin, MgCl2, and β-NADPH – were all of analytical grade.
PI3K and mTOR enzymes were purchased from Thermo Fisher Scientific (A11815) and EMD Millipore (14-770), respectively. A Kinase-Glo Plus luminescent kinase-assay kit was purchased from Promega (V3771). U87MG, BT474, A549, SKOV-3, PC-3, HCT116, and 786-0 cell lines were purchased from ATCC. RPMI- 1640 medium for 786-0/BT474, McCoy’s 5A medium for HCT116/SKOV-3, and DMEM for U87MG were purchased from GE Healthcare. Ham’s F-12K medium for PC-3/A549 was purchased from Thermo Fisher Scientific, and FBS was purchased from GE Healthcare. All the liver microsomes were purchased from the Research Institute for Liver Diseases. BALB/c nude mice were obtained from Huafukang Biological Technology, and Sprague Dawley rats were purchased from Vital River Laboratories.
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4

In Vitro AMPK Kinase Assays

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The in vitro preliminary kinase assays human α1β1γ1 AMPK were carried out according to the previous experimental method [33 (link)]. The screened compounds and α1β1γ1 AMPK isoform were provided by Topscience Co. (Shanghai, China) and Huawei Pharmaceutical Co. Ltd. (Shanghai, China), respectively. Generally, each of the evaluated compounds was dissolved in 10% Dimethyl sulphoxide at 10 μM and diluted to a required concentration with buffer solution. Then, 5 μL of the dilution was added to a 30 μL kinase assay buffer and 5 μL AMPK isoform per well. The solution was mixed at 0 °C for 30 min. Next, 5 μL of AMARA petide and 5 μL Adenosine triphosphate (ATP) were added to the well. The enzymatic reactions were conducted at 30 °C for 30 min. The AMPK activity was determined by quantifying the amount of ATP remaining in assay solution with Kinase-Glo Plus luminescent kinase assay kit (Promega, Madison, WI, USA). The luminescent signal is correlated with the amount of ATP present, while inversely correlated with the kinase activity. The mean values from three independent experiments were used for the expression of relative activities. A-769662, a β1-selective AMPK activator reported by Abbott laboratories, was used as a control.
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5

Kinase Glo Luminescent Assay for PknB

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A non-radioactive assay was performed using Promega ‘Kinase Glo’ plus Luminescent Kinase assay kit for the determination of IC50 values. As for PknB, the reaction was carried out in a 96-well plate in 45 μl buffer (25 mM Tris-HCl pH = 7.4, 5 mM MgCl2, 2 mM MnCl2, 3 μM PknB) containing the compound. After incubation at 4 °C for 30 min, ATP was added to the reaction buffer at the final concentration of 100 μM. The assay was conducted at 37 °C for 3 hours. The intensity of luminescence signal was determined by Multilabel Plate Reader (PE Envision) with addition of 50 μl Kinase Glo reagent. The IC50 values were calculated using the GraphPad Prism5 software.
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6

Kinase Activity Assay of Purified PKM2

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PK activity was measured by using Kinase-Glo Plus Luminescent Kinase Assay kit (Promega Corporation, Madison, WI, USA). Purified WT or mutant PKM2 (50–100 nM) was added in 100 μl assay buffer containing 50 mM Tris pH 7.5, 100 mM KCl, 10 mM MgCl2, 200 μM PEP, 200 μM ADP, and 3% DMSO. After a 15-min incubation, Kinase-Glo Plus reagent was added, according to the manufacturer’s instructions. In some cases, 0–40 μM FBP and 0–150 nM scFv 5 were added.
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7

Enzymatic Assay of Arc1 and Bac1 Kinases

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The enzymatic reaction catalyzed by Arc1, Bac1 and its mutants was assayed at 70°C by monitoring the increase in the amount of the product ATP using the Kinase-Glo Plus Luminescent Kinase Assay kit (Promega). The assay solution consisted of 50 mM HEPES (pH 8.0), 25 mM KCl, 10 mM (NH4)2SO4, 2.0 mM Mg(CH3COO)2, 1.0 mM dithiothreitol, 1.0 mM ADP and 2.5 mM GTP. One enzyme unit equaled 1 μmol ATP formed per min. The Michaelis constant values (Kms) for the substrate ADP and the catalytic rate constant (kcat) were calculated based on the steady-state kinetic data with an assay solution of 50 mM HEPES (pH 8.0), 25 mM KCl, 10 mM (NH4)2SO4, 2.0 mM Mg(CH3COO)2, 1.0 mM dithiothreitol, 2.5 mM GTP, with ADP at concentrations between 50 and 1000 μM. The kinetic parameters were calculated by nonlinear least-square fitting of the steady-state velocity data to the Michaelis-Menten equation using the Enzyme Kinetics module of SigmaPlot Ver. 13 (Systat Software).
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8

PEDV nsp13 ATPase Kinase Activity Assay

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The Kinase-Glo Plus Luminescent Kinase Assay kit (Promega, USA) was used to detect the ATPase activity of PEDV nsp13 or its mutant nsp13-K289A. Briefly, the purified recombinant proteins in reaction buffer (40 mM Tris−HCl at pH 7.5, 50 mM NaCl, 2 mM Mg2+, 200 μM ATP) were added to a 96-well black plate (Jet Bio-Filtration, Guangzhou, China) with deionized water to a total volume of 50 μL. The plate was then incubated in a 37 °C incubator for the indicated times. At the end of the reaction, 50 μL of Kinase-Glo reagent was added to the reaction mixture. After mixing and incubation at room temperature for 2 min, the luminescence of each well was measured via 1450 MicroBeta Trilux (Perkin Elmer, Waltham, MA, USA).
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