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7 protocols using lipopolysaccharide lps escherichia coli serotype 055 b5

1

Immune Cell Phenotyping Protocol

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Reagents: Antibodies: CD14 PE-Cy7(clone M5E2), CD19 APC-Cy7 (clone SJ25C1) and CD3 Pacific blue (clone UCHT1) (BD Biosciences Pharmingen, San Jose, CA); anti HDAC3 FITC (clone H-99) (Santa Cruz Biotechnology, Santa Cruz, CA); anti IL-1β APC (clone 8516)and anti IL-33 PE (clone 390412) (R&D Systems, Minneapolis, MN);Lipopolysaccharide (LPS) (Escherichia coli serotype 055:B5) and Trichostatin A were obtained from Sigma (St. Louis, MO). Fixation and permeabilization kits were obtained from Invitrogen (Carlsbad, CA).
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2

LPS-Induced Neuroinflammation in Atm Mice

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Lipopolysaccharide (LPS, Escherichia coli serotype 055:B5) was purchased from Sigma-Aldrich (L2880, St. Louis, MO, USA), dissolved in distilled water, and stored at − 20 °C. Adult mice (3-month-old) of Atm+/+and Atm−/− genotypes were given daily intraperitoneal injections of LPS (1 mg/kg for a period of 4 days) in keeping with our previous protocol [24 (link)]. A control group was treated on the same schedule with injection of filtered saline only. Mice were killed on the fifth day, 24 h after the last injection. Mice in both groups were monitored carefully for signs of sickness or distress during the entire period. Following sacrifice, the brains were dissected and the tissues prepared as described below.
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3

Multiparametric Immune Cell Profiling

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Antibodies: CD14 PE-Cy7(clone M5E2), CD19 APC-Cy7 (clone SJ25C1) and CD3 Pacific blue (clone UCHT1) (BD Biosciences Pharmingen, San Jose, CA); anti HDAC3 FITC (clone H-99) (Santa Cruz Biotechnology, Santa Cruz, CA); anti IL-1β APC (clone 8516)and anti-IL-33 PE (clone 390412) (R&D Systems, Minneapolis, MN);Lipopolysaccharide (LPS) (Escherichia coli serotype 055:B5) and Trichostatin A were obtained from Sigma (MO). Fixation and permeabilization kits were obtained from Invitrogen (Carlsbad, CA).
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4

Inflammatory Mediator Profiling

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Lipopolysaccharide (LPS) (Escherichia coli serotype 055:B5), palmitic acid (PA) and oleic acid (OA) were ordered from Sigma (Deisenhofen, Germany). Recombinant tumor necrosis factor (TNF), interleukin (IL)-6 and leptin, and mouse Tgfb DuoSet ELISA were from R&D Systems (Wiesbaden-Nordenstadt, Germany). Ccn2 ELISA was from Hölzel Diagnostika Handels GmbH (Köln, Germany).
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5

RRTP Extraction and Characterization

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According to our previous research (Tang et al., 2022 (link)), RRTP is extracted from RRT fruit and preserved in microbiology and biochemical pharmaceutical engineering research center of Guizhou Medical University. Lipopolysaccharide (LPS, Escherichia coli serotype 055:B5) was purchased from Sigma-Aldrich. Acetonitrile and methanol (UPLC-grade) were collected from Merck.
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6

Isolation and Culture of Human PBMCs

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Human peripheral blood mononuclear cells (PBMCs) were isolated from healthy volunteers by density-gradient centrifugation over Ficoll-Paque (GE Healthcare). Percoll isolation of monocytes was performed as previously described (Arts et al., 2016a (link)). Cells were cultured in RPMI 1640 Dutch-modified culture medium (RPMI medium, Invitrogen) supplemented with 10 μg/mL gentamicin (Centraform), 2 mM Glutamax (Invitrogen), 1 mM pyruvate (Invitrogen), and 10% pooled human serum. Stimuli and inhibitors used were Escherichia coli lipopolysaccharide (LPS; serotype 055:B5, Sigma-Aldrich, 10 ng/mL), and Pam3Cys (EMC microcollections, L2000, 10 μg/mL), Laminarin (Sigma), BCG (Statens Serum Institut, Copenhagen, Denmark), cyproheptadine (Selleckchem), sinefungin (Sigma), and diphenhydramide (Sigma).
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7

Monocyte Isolation and Activation Assay

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Buffy coats from healthy donors were obtained after written informed consent (Sanquin Blood Bank, Nijmegen, the Netherlands). Human peripheral blood mononuclear cells (PBMCs) were isolated by density-gradient centrifugation over Ficoll-Paque (GE Healthcare). Percoll isolation of monocytes was performed as previously described as yielding a level of T cell contamination, measured by fluorescence-activated cell sorting of only 5% [13 (link), 17 (link)]. Purified monocytes were cultured in RPMI 1640 Dutch-modified culture medium (RPMI medium, Invitrogen) supplemented with 50 μg/mL gentamicin (Centraform), 2 mmol/L Glutamax (Invitrogen), 1 mmol/L pyruvate (Invitrogen), and 10% pooled human serum. Stimuli and inhibitors used were Escherichia coli lipopolysaccharide (LPS; serotype 055:B5, Sigma-Aldrich, 10 ng/mL), Pam3Cys (EMC Microcollections, L2000, 10 μg/mL), 3-(3-pyridinyl)-1-(4-pyridinyl)-2-propen-1-one (3PO, Sigma-Aldrich), and 2-deoxy-d-glucose (2-DG, Sigma-Aldrich). Low-density lipoprotein was isolated from pooled human serum by ultracentrifugation and oxidized by incubating with 20 μmol CuSO4/L for 16 h at 37 °C followed by dialysis, as previously described [4 (link)].
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