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Dibutylphthalate polystyrene xylene (dpx)

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DPX is a mounting medium used in microscopy. It is designed for the preparation and preservation of biological and other specimens for microscopic examination.

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21 protocols using dibutylphthalate polystyrene xylene (dpx)

1

Tissue Mounting Procedure for Imaging

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After immunohistochemistry, tissues were post-fixed with 4% PFA in PBS for 4 hr at RT followed by four, 15 min washes in PBT. To improve adhesion during mounting, tissue were washed in PBS (15 min) to remove the Triton and then placed on poly-L-lysine-coated cover slips to which they electrostatically adhere. Tissues were then dehydrated through a series of ethanol baths (30%, 50%, 75%, 95%, and 3 × 100%) for 10 min each and then 100% xylene three times for 5 min each in Coplin jars. Samples were embedded in a xylene-based mounting medium (DPX; Electron Microscopy Sciences, Hatfield, PA), and the DPX was allowed to dry for 2 days before imaging. For comparing expression intensities, up to 60 brains and VNCs were mounted on the same cover slip. Because tissues were attached to the flat surface of the cover slip in the same orientation, the same brain structures were located at the same depth during confocal imaging, facilitating a fair comparison of signal intensity across samples.
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2

Immunostaining Larval Tissue Samples

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Third instar larvae were dissected in 1×PBS, fixed in 4% paraformaldehyde (Electron Microscopy Sciences) in 1× PBS for 15 minutes, rinsed for 15 minutes in 1× PBS + 0.3% Triton X-100 (Sigma Aldrich) (PBS-TX) and blocked for at least 1 hour in 5% normal donkey serum (Jackson Immunoresearch) at 4°C. Primary antibodies used were chicken anti-GFP (1:1000; Abcam), rabbit anti-DsRed (1:200–1:500, Clontech), mouse anti-1D4 anti-Fasciclin II (1:10; Developmental Studies Hybridoma Bank), Goat anti-HRP (1:250, Jackson) and Rabbit anti-V5 Dylight 549 (1:250, Rockland). Larvae were incubated for 1–2 days in primary antibodies at 4°C, washed for at least 60 minutes in PBS-TX, and incubated 1–2 days in 4°C in species-specific, fluorophore-conjugated secondary antibodies (Jackson ImmunoResearch) at 1:200 in PBS-TX. Tissue was mounted on poly-L-lysine coated coverslips, dehydrated in ethanol series, cleared in xylenes, and mounted in DPX (Electron Microscopy Sciences). For FLPouts, embryos were collected for 1–3 days at 25°C, heat shocked at 38°C for 4–8 minutes, raised at 25°C until dissection at third instar stage.
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3

Nissl Staining for FC Cytoarchitecture

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To examine FC cytoarchitecture, two additional slides from each case were stained using thionin, a Nissl stain that visualizes the neuronal endoplasmic rough reticulum and nucleus [40 (link)]. Sections were deparaffinized, placed in 100% ethanol for 3 min then a 50% chloroform/50% ethanol solution for 15 min, rehydrated in a decreasing gradient of alcohols, soaked in a 0.5% thionin solution (pH 4.3) for 7 min, washed with distilled water, dehydrated in an increasing gradient of alcohols, cleared in xylenes, and coverslipped using DPX (Electron Microscopy Sciences, Hatfield PA) [60 (link)]. To control for batch-to-batch variation, sections from each case were processed at the same time, masked to demographics.
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4

Immunohistochemical Labeling of Protein Targets

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Immunohistochemistry was performed as described previously (Costa Mdo et al., 2013 (link); Zeng et al., 2013 (link)). Briefly, free floating sections were labeled with goat anti-N-terminal HTT (1:250; Santa Cruz Biotechnology, Santa Cruz, CA) or mouse anti-ATXN3 (1H9) (1:1000, MAB5360; Millipore). Immunostaining was performed using the Vectastain Elite Kit (Vector Laboratories, Burlingame, CA) or Vector MOM immunodetection kit (Vector Laboratories) when a mouse primary antibody was used. Sections were developed in ImmPACT DAB (Vector Laboratories), mounted on Superfrost slides (Fisher Scientific, Pittsburgh, PA) and air dried after dehydration with graded ethanol and xylene. Coverslips were affixed with DPX (Electron Microscopy Sciences, Hatfield PA, USA). All sections were imaged with an Olympus BX51 microscope (Olympus, Center Valley, PA).
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5

Immunohistochemical Analysis of β-catenin in Melanoma

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We performed single-color immunohistochemistry (IHC) for β-catenin in 5 μm-thick sections obtained from formalin-fixed, paraffin-embedded melanoma craniotomy tissues placed on positively charged glass slides, as we have previously described [26 (link)]. Briefly, slides were dried, then baked at 60 °C for 90 min, followed by heat-induced epitope retrieval using HIER Buffer L (Thermo Scientific, TA-135-HBL, Thermo Fisher Scientific, MA). Endogenous peroxidases were blocked using 3% hydrogen peroxide for 10 min at room temperature (RT). Tissues were then blocked using 10% normal goat serum for 1 h at RT and incubated with an antibody against β-catenin (rabbit monoclonal, clone 247, ab32572, 1:500 dilution, Abcam, MA) overnight at 4 °C. For negative control, we stained representative tissue sections omitting the primary antibody. Following incubation with biotinylated goat anti-Rabbit IgG (111–065-144, dilution 1:500, Jackson ImmunoResearch Laboratories, PA) for 60 min at RT, tissues were treated with ABC-HRP (Vector, PK-6100, Vector Laboratories, CA) and visualized using ImmPACT VIP Peroxidase Substrate (Vector, SK-4605). Finally, tissues were counterstained with 0.5% Methyl Green, dehydrated, cleared, and cover-slipped using DPX (Electron Microscopy Sciences, 13,512, Electron Microscopy Science, PA).
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6

Immunohistochemistry of Brain Tissues

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The following primary antibodies were used:
The following secondaries were used:
Following the standard immunohistochemistry protocol the brains were fixed again in 4% Paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA) for four hours at room temperature. The brains were mounted on poly-L-lysine-coated cover slips and dehydrated through a series of ethanol baths (30%, 50%, 75%, 95%, and 3 × 100%) each for 10 min. Following dehydration they were submerged in 100% Xylene three times for 5 min each. Samples were embedded in DPX (DPX; Electron Microscopy Sciences, Hatfield, PA). Whole mount brain and VNCs were imaged using a Plan-Apochromat 20x/0.8 M27 objective (voxel size = 0.56 × 0.56×1.0 µm; 1024 × 1024 pixels per image plane). All images of brains expressing csChrimson::mVenus were visualised in 20x mode. Note that this protocol was also used to get extra, confirmatory images of split-GAL4 lines used in behaviour.
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7

Cytochrome Oxidase Staining Protocol

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To identify sections that contained IC and differentiate between IC subregions, a subset of sections from each animal were stained for cytochrome oxidase. Sections were first fixed in 4% paraformaldehyde for 30 min at 4°C, then rinsed with 0.1 M phosphate buffer before staining. Sections were stained with a solution containing 3,3′-diaminobenzidine (DAB) (40 mg/ml) (MP Biomedicals), cytochrome C (0.3 mg/ml) (Sigma-Aldrich), and sucrose (45 mg/ml) in 0.1 M phosphate buffer for 2 hr at 37°C. Following staining, sections were dehydrated in ethanol and cleared with xylenes before being coverslipped with DPX (Electron Microscopy Sciences).
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8

Visualizing Collagen and NHS Colocalization in Pancreatic Tumors

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To characterize the co-localization of collagen and AF647 NHS, approximately 1 million p12 KPC 4662 murine pancreatic tumor cells in 1:1 PBS/matrigel were inoculated subcutaneously on the dorsal flanks of female C57BL/6J mice. On day 12 after KPC 4662 pancreatic tumor injections, 50 μL of 0.2 mM AF647 NHS ester (n = 2) was infused intratumorally. All of the tumors were at least 150 mm3 in volume, and the 50 μL volume was delivered over 1 min with a 27g winged catheter and retracted over an additional minute slowly. One day after intratumoral NHS infusion, mice were perfused by intra-arterial infusion of 20 mL cold PBS followed by 20 mL of 4% formaldehyde through a 27g winged needle infusion set and tumors were extracted. The tumors were fixed in 4% formaldehyde, rinsed, and cryoprotected using 30% sucrose in PBS. Tumors were embedded in optimal cutting temperature compound (OCT) (Fisher Healthcare, #4585) and cryosectioned at 10 μm. Slides were rinsed in distilled water and then incubated in 0.1% picrosirius red solution for 30 min at room temperature. Slides were then dehydrated using two changes of absolute alcohol, cleared in xylenes, and cover-slipped using DPX (Electron Microscopy Sciences, #13512).
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9

Light Microscopy of Insect Heads

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Light microscopy was performed on insect heads following the procedure described by Reisenman and collaborators (Reisenman et al., 2002 (link)). Briefly, freshly decapitated heads were fixed for 3 hr in a mixture of 2.5% glutaraldehyde and 2.0% paraformaldehyde in phosphate buffer (pH 7.3) with glucose and CaCl2 added. After gradual dehydrated in 100% ethanol, they were embedded via propylene oxide in Durcupan ACM (Electron Microscopy Sciences no. 14040). We used glass knives mounted on a motorised microtome to serially section blocks at 2–5 µm. Sections were stained on a hot plate with Toluidine Blue-Basic Fuchsin and mounted on a slide with DPX (Electron Microscopy Sciences no. 13510). Photomicrographs were adjusted for brightness and contrast by using Adobe Photoshop CS2. A total of 10 individuals were prepared, sectioned, stained and analysed.
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10

Cresyl Violet Brain Sectioning and Staining

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A group of WT, cKO, and Transgenic animals was sacrificed, and brains were cut into 600 μm sections using a vibratome, fixed in 4% PFA (6 h at 4°C), and cryoprotected overnight in 30% sucrose in 1× PBS. After thin sectioning to 40 μm, sections were mounted onto gelatin-coated slides and dehydrated in alcohol (100%), incubated in a 0.1% cresyl violet solution in dH2O (5 min), destained with 0.1% glacial acetic acid in 95% ethanol, cleared with xylenes, and coverslipped with DPX (Electron Microscopy Sciences).
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