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Proxiplate 384 plus plates

Manufactured by PerkinElmer

The ProxiPlate-384 Plus is a 384-well microplate designed for high-throughput screening and assay development. The plates are made of black polystyrene and are optimized for fluorescence and luminescence detection. The wells have a flat bottom design and are suitable for a variety of cell-based and biochemical assays.

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3 protocols using proxiplate 384 plus plates

1

RNase Activity Inhibition Assay for IRE1α

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Example 234

Biochemical Assay: Inhibition of RNase Activity of IRE1α

The RNase reactions were performed in 384 well black ProxiPlate-384 Plus plates (PERKIN Elmer) using 50 mM Tris assay buffer with 0.5 mM MgCl2, 10 mM KCl, 0.03% Tween, 2 mM DTT and 1% DMSO. Test compounds were prepared on the day of assay and dispensed using D300 digital dispenser as a 10-point ½ log dilution series in duplicate, normalized to a final DMSO concentration of 4%. Test compounds were pre-incubated for 30 min at room temperature with IRE1α kinase (E31-11G from Signal Chem) in 2.5 μL of assay buffer. Then 2.5 μl of assay buffer containing substrate (5′ Alexa Fluor 647-rCrArU rGrUrC rCrGrC rArGrC rGrCrArUrG—Iowa Black RQ quencher 3′) added, giving a final concentration of enzyme of 0.325 nM and of substrate of 100 nM. After 20 minutes incubation at room temperature the reactions were stopped by added 5 μL of 5M urea, incubated at room temperature for 10 minutes and fluorescence measured on a plate reader (EnVision, PerkinElmer) IC50 values calculated by fitting a sigmoidal curve to percent inhibition of control versus compound concentration.

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2

Optimized IL-23 Receptor Dimerization Assay

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Glucose agar plates 10 cm CM minus Trp/Ura from Teknova (C3260), Streakers wooden sticks from Biolog (3026), CM galactose broth Trp-/Ura- from Teknova (C9130), CM glucose broth Trp-/Ura- from Teknova (C8240), vented 50 mL conical flasks form TRP (87050), 96 well U-Bottom plates from Falcon (353077), 96 well plate 2 mL PP from Thomson Instrument company (931130), Blocker Casein in PBS from Thermo (QD216041), 2xYT from Teknova (2Y1080), AF647 anti-M-13 conjugated in-house according to manufacturer recommendation, Anti-V5 antibody from Invitrogen (46–1157), FITC-anti mouse IgG2a form Biolegend (407106), PE-Goat anti-mouse IgG2b from Southern Biotech (1090-09S), Human IL-12/IL-23 P40 Mab Clone1645 from R&D Systems (Mab 6091–500). Peptide synthesis was outsourced to CPC Scientific. Avi-tagged IL-23 and FLAG-tagged IL-23R were expressed and purified in house following standard Molecular Biology procedures. Alpha-screen Streptavidin Donor beads (#509048876) and AlphaLISA® Acceptor beads conjugated to anti-FLAG antibody (#AL112M) were purchased from Perkin Elmer. ProxiPlate-384 Plus plates (#6008289) for AlphaLISA assays were also obtained from Perkin Elmer. PathHunter® U2OS IL-23R/IL-12RB1 Dimerization Cell Line was purchased from DiscoverX (#93-1007C3). 96-well half area plates used in the dimerization assay were from Costar (#3688).
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3

Protein-Protein Interaction Screening via ALPHAScreen

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ALPHAScreen was performed as previously described16 (link)–18 (link), using the cMyc detection kit and Proxiplate-384 Plus plates (PerkinElmer). The plates were incubated for 45 min at room temperature, followed by the addition of streptavidin-coated donor beads and incubation in the dark for 45 min at room temperature. The ALPHAScreen signal was measured on an Enivision Plate Reader (PerkinElmer) using manufacturer’s recommended settings. Data from three independent experiments was analyzed in GraphPad Prism version 6.0. The luminescence intensities plotted are averages over three independent expressions/experiments where for each experiment, the signal intensity from a negative control, GFP alone in solution was substracted. An average of all the normalized data for both configuration of each protein pair (GFP-protein A/protein B-Cherry or GFP protein B/protein A-Cherry) was calculated to provide the binding index where values above 2000 were considered background. From previous experiments16 (link)–18 (link), a threshold of above 2000 (background) selected positive interactions and was therefore employed in these studies.
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