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10 protocols using streptomycin

1

Differentiating SH-SY5Y Cells with Retinoic Acid and BDNF

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SH-SY5Y cells were cultivated in DMEM high glucose (GIBCO – Thermo Fisher Scientific: 12800-017), supplemented with 10% (v/v) FBS (GIBCO – Thermo Fisher Scientific) and 100 units/ml penicillin and 100 μg/ml of streptomycin (GIBCO – Thermo Fisher Scientific: 15140122) and kept in a humid atmosphere containing 5% (v/v) CO2 at 37°C. Cellular differentiation was induced as described by Encinas and coworkers [24 (link)] with some modifications. Briefly, 2.5 × 104 cells/cm2 were plated on DMEM high glucose medium supplemented with 10% (v/v) FBS and 1% penicillin/streptomycin solution, in culture plates or on 13 mm2 glass coverslips previously treated with 0.1 mg/ml poly-D-lysin (Sigma-Aldrich). The next day, the medium was removed and replaced with medium II (DMEM high glucose medium containing 1% (v/v) FBS, 1% penicillin/streptomycin solution and 10 μM retinoic acid [Abcam: ab120728]). After 3 days of growth, medium was replaced with fresh medium II supplemented with 50 ng/ml brain-derived neurotrophic factor (BDNF; Sigma-Aldrich: SRP3014) and cells were grown for further 4 days. RNA extraction and qPCR assays were performed as described above.
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2

Isolation and Culture of Pulmonary Artery Endothelial Cells

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The PAECs were isolated by collagenase digestion followed by immunomagnetic separation using anti-CD31 monoclonal antibody-labeled beads (Abcam). The PAECs were cultured in M199 medium (Life Technologies; Thermo Fisher Scientific, Inc.), supplemented with 20% fetal bovine serum (FBS; Gibco; Thermo Fisher Scientific, Inc.), streptomycin (100 µg/ml), fungizone (1.25 µg/ml), penicillin (100 U/ml), heparin (10 U/ml) and α-FGF (5 ng/ml; Abcam) at 37°C in a humidified atmosphere with 5% CO2. The PAECs (at least 6 passages) were used for subsequent experiments.
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3

Comprehensive Reagent Sourcing for Diverse Biochemical Analyses

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The chemicals and reagents used in this study were obtained as follows: Sigma-Aldrich (St. Louis, MO, USA) for bull serum albumin (BSA), Evans blue, Triton X-100, Tween-20, 4′,6-diamidino-2-phenylindole (DAPI), isopropyl-β-d-thiogalactoside (IPTG), Coomassie brilliant blue G 250, rifampin, kanamycin, gentamicin, and methyllycaconitine citrate (MLA); Thermo Fisher Scientific (Waltham, MA, USA) for fluorescent α-bungarotoxin conjugates; Gibco (Thermo Fisher Scientific, Inc., Waltham, MA, USA) for penicillin G, streptomycin, glutamine, and pyruvate; Abcam (Cambridge, UK) for antibodies against SLURP1, α7 nAChR or β-actin; Proteintech (Proteintech Group, Chicago, IL, USA) for enzyme-linked immunosorbent assay (ELISA) kits. The rest reagents were purchased from Beyotime Institute of Biotechnology, Shanghai, China.
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Glioma Cell Line Culturing Protocol

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The raw sequencing data for 325 gliomas was downloaded from the Chinese Glioma Genome Atlas (CGGA) data portal (http://www.cgga.org.cn/portal.php). Human LN229 glioma cell line was obtained from the Chinese Academy of Sciences cell bank. Glioma cell line was cultured in Dulbecco's modified Eagle's medium (DMEM) (Thermo Fisher Scientific, Inc., Waltham, MA, USA), which was supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Inc.), 100 units/ml penicillin, and 100 ng/ml streptomycin (Abcam, Shanghai, China). All cells were incubated at 37°C in an atmosphere of 5% CO2.
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5

Immunomodulatory effects of BM-MSCs on T cells

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Mouse splenic CD4+ T lymphocytes were isolated using a mouse CD4+ T Cell Isolation Kit (Miltenyi Biotec; Auburn, CA, USA) with magnetic beads following the manufacturer’s instructions. Mandibular BM-MSCs at passage 2–4 from control mice or periodontitis mice after the indicated manipulation of gene expression were seeded on 24-well plates at a concentration of 1 × 105 cells/well and incubated overnight before they were co-cultured with activated mouse CD4+ T cells. Mouse T lymphocytes were pre-activated in RPMI 1640 medium supplemented with 10% heat-inactivated FBS, 50 μM 2-mercaptoethanol, 10 mM HEPES, 2 mM L-glutamine, 100 U/mL penicillin, and 100 mg/mL streptomycin (all reagents were from Thermo Fisher Scientific) by plate-bound anti-CD3 antibody (1:1000 dilution; #ab16669; Abcam, USA) and soluble anti-CD28 antibody (1:5000 dilution; #ab283860, Abcam, USA) for 2–3 days in 24-well plates. Recombinant human TGF-β1 (2 ng/mL; R&D Systems, Minneapolis, MN, USA) and IL-2 (2 ng/mL; R&D Systems) were added into the culture medium to induce Treg differentiation; while Recombinant human TGF-β1 (2 ng/mL; R&D Systems) and IL-6 (50 ng/mL; R&D Systems) were added to induce Th17 differentiation. The activated mouse CD4+ T cells were loaded on the adherent BM-MSCs and co-cultured for further 2–3 days. The supernatant and T cells on top layers were collected for further analyses.
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6

Functional Assay of CD8+ T Cells

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CD8+ T cells from the spleens of WT mice were isolated using MACS beads (Miltenyi Biotec) and stimulated for 24 h in 12-well plates (∼3 × 106 cells/well) coated with anti-CD3 (4 µg/mL, Bio X Cell) and anti-CD28 (4 µg/mL, Bio X Cell) in RPMI-1640 media (Hyclone) supplemented with 10% FCS (Hyclone), penicillin (100 U/mL) and streptomycin (100 μg/mL) (Thermo Fisher Scientific), 12 mM Hepes (Thermo Fisher Scientific), and 50 µM β-mercaptoethanol (Sigma-Aldrich). Tumor cells were seeded into 96-well plates (104 cells/well) in DMEM supplemented with 10% FBS, penicillin (100 U/mL) and streptomycin (100 μg/mL), and IFN-γ (20 ng/mL, abcam) for 24 h for activation. Then, 104 stimulated T cells were seeded onto activated tumor cells for 44 h before counting [28 (link),29 (link)].
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7

Enrichment and Transfection of Breast Cancer Cells

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BC MCF7 cells were fostered in high-glucose DMEM (Abcam, Shanghai, China) added with 100 U/mL penicillin, 100 mg/L streptomycin, and 10% FBS (Abcam, Shanghai, China) under 5% CO2, floating in serum-free DMEM/F12 culture medium (Abcam) with 20 ng/mL EGF, 20 ng/mL b-FGF, and 2% B27 (Abcam). Then, we spent 10 days in culturing them within ultra-low attachment plates. miR-30d-5p mimics were synthesized within the GenePharma company (Shanghai, China). Additionally, they were transfected into cells using Lipofectamine 2000 reagent in Invitrogen (USA) in light of the methods of Liu, et al. [16 (link)].
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8

HeLa Cell Culture in Serum-Supplemented DMEM/F12

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The human cervical cancer cell line HeLa was purchased from the Cell Bank
of Type Culture Collection of the Chinese Academy of Sciences
(Beijing, China). Cells were cultured in DMEM/F12 (1:1)
(GIBCO® Cell Culture, Carlsbad, CA, USA),
supplemented with 10% fetal calf serum (FCS; Solarbio, Beijing,
China), 100 U/mL penicillin, and 100 µg/mL streptomycin (Abcam,
Cambridge, MA, USA) at 37°C with 5% CO2.
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9

Cell Line Cultivation and Maintenance

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A human colon epithelial cell line (NCM460) and four human CRC cell lines (HT29, LOVO, PKO, and SW480) were purchased from the cell bank of the Chinese Academy of Sciences (Shanghai, China). All cell lines were cultured in RPMI1640 medium (Gibco, Carlsbad, CA, USA) supplemented with 10% fetal bovine serum (FBS, Invitrogen, Carlsbad, CA, USA), 100 IU/mL penicillin and 100 mg/mL streptomycin (Abcam, Cambridge, MA, UK). All cell lines were maintained at 37°C in a humidified atmosphere containing 5% CO2.
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10

Culturing Human Breast Cell Lines

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Human normal breast epithelial cell line (MCF-10A) and two human BC cell lines (MCF-7, SKBR-3) were bought from the Chinese Academy of Sciences (Shanghai, China). All cell lines were given culture in RPMI1640 medium (Gibco, U.S.) with 10% fetal bovine serum (FBS, Invitrogen), 100 IU/mL penicillin and 100 mg/mL streptomycin (Abcam, UK) at 37°C in a humid surrounding containing 5% CO2.
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