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3 3 dipropylthiadicarbocyanine iodide disc3 5

Manufactured by Merck Group
Sourced in United States

3,3′-Dipropylthiadicarbocyanine iodide (DiSC3(5)) is a cyanine dye commonly used as a fluorescent probe. It has an absorption maximum at 650 nm and an emission maximum at 672 nm. The dye is lipophilic and can stain cell membranes.

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12 protocols using 3 3 dipropylthiadicarbocyanine iodide disc3 5

1

Antibacterial and Cytotoxicity Evaluation

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Lipopolysaccharide (LPS; from Pseudomonas aeruginosa), Lipoteichoic acid (LTA; from Staphylococcus aureus), 3-(4,5-dimetylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), dimethyl sulfoxide (DMSO), propidium iodide (PI), n-phenyl-1-naphthylamine (NPN), HEPES, and 3,3′-dipropylthiadicarbocyanine iodide (DisC3-5) were obtained from Sigma-Aldrich (St Louis, MO, USA).
Pseudomonas aeruginosa ATCC 27853 and Staphylococcus aureus ATCC 25923 were obtained from the ATCC (American Type Culture Collection, Manassas, VA, USA), and Acinetobacter baumannii KCTC 2508 and Bacillus subtilis KCTC 2217 were obtained from the KCTC (Korean Collection for Type Cultures, Jeongeup-si, Jeollabuk-do, Korea). Human skin epithelial cells (HaCaT cells) were obtained from ATCC.
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2

Antimicrobial Peptides: Characterization and Labeling

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The selected membrane-active peptides gramicidin D (formyl-VGALAVVVWLWLWLWG-NHCH2CH2OH), cecropin A (KWKLFKKIEKVGQNIRDGIIKAGPAVAVVGQATQIAK-NH2), magainin 2 (GIGKFLHSAKKFGKAFVGEIMNS-OH), and melittin (GIGAVLKVLTTGLPALISWIKRKRQQ-NH2) were purchased from Sigma-Aldrich® (St. Louis, MO, USA). cecropin A and gramicidin D were dissolved in DMSO and magainin 2 and melittin in pyrogenic water. The stock solutions were kept at −20 °C. The uncouplers carbonyl cyanide 3-chlorophenylhydrazone (CCCP) and carbonyl cyanide 4-(trifluoromethoxy)phenylhydrazone (FCCP), the membrane potential-sensitive fluorescent distributional probes bis-(1,3-dibutylbarbituric acid)trimethine oxonol (DiBAC4(3)) and 3,3′-dipropylthiadicarbocyanine iodide (diSC3(5)), and the membrane-impermeable fluorescent dye propidium iodide (PI) were purchased from Sigma-Aldrich. Stock solutions were prepared as follows: 400 µM diSC3(5) in 100% DMSO, 50 µM DiBAC4(3) in 100% DMSO, and 1 mg/mL PI in ddH2O (PI would precipitate in a more concentrated solution). All stocks, were protected from light by aluminum foil and were stable at −20 °C for at least 6 months.
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3

Membrane Depolarization Assay for Antibacterial Compounds

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The cytoplasmic membrane depolarization was determined by using the membrane potential-sensitive fluorescent dye 3,3-Dipropylthiadicarbocyanine Iodide DiSC3(5), (Sigma-Aldrich). Gram-positive (S. aureus ATCC209p) and Gram-negative (E. coli CDCF-50) bacteria were incubated to a mid-log phase in Mueller Hinton broth (37 °C, 120 rpm), harvested by centrifugation (3.000 rpm for 10 min), washed twice, and diluted to an optical density of 0.05 at 600 nm with 5 mM HEPES buffer (pH 7.4, containing 20 mM glucose) containing 0.1 M KCl to equilibrate the cytoplasmic and external K+. Then, the cell suspensions (180 μL) were mixed with 20 μL of 0.8 μM DiSC3(5) in a 96-well plate and incubated for 15 min in darkness (until maximal dye uptake was reached, the background fluorescence was recorded (excitation λ = 620 nm, emission λ = 670 nm) by Spectrophotometer Infinite M200 PRO (Tecan, Switzerland). After that, 5c12 and reference compounds (benzalkonium chloride, miramistin) in 0.5, 1, and 2 × MBCs were added to cell suspensions into a 96-well plate. Changes in fluorescence were observed during 20 min of recording.
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4

Membrane Depolarization Activity Assay

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The cytoplasmic membrane depolarisation activity of HICA was determined using the voltage sensitive fluorescence dye 3,3′-Dipropylthiadicarbocyanine iodide [DiSC3(5)] (Sigma-Aldrich, Czech Republic) as described previously [22 (link)] with minor modifications. B. cereus NZRM5, B. cereus M4, S. aureus NZRM917, E. coli O157:H7 NCTC 1200, E. coli AGR3789, P. aeruginosa NZRM981, and P. aeruginosa NZRM4034 were grown overnight in MHB at 35°C and diluted to 0.3 OD595 with fresh MHB supplemented with 0.5 mg/mL Bovine Serum Albumin (BSA) (Sigma-Aldrich, USA). The diluted bacterial cell suspension (130 μL) was transferred to an opaque-walled 96 well plate and combined with 20 μL of 60 μM DiSC3(5) (Sigma-Aldrich, Czech Republic). The fluorescence quenching was then measured using the Varioskan™ LUX multimode microplate reader at an excitation wavelength of 610 nm and emission wavelength of 660 nm, until a stable fluorescence signal was achieved. Following the addition of HICA (4 mg/mL) or sterile water to corresponding wells, fluorescence was immediately measured and monitored for 25 min at 60 s intervals with 10 s of vigorous shaking before each measurement. Samples with added sterile water served as the untreated controls and used to compare the change in the fluorescence intensity of HICA-treated group.
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5

Chemical Reagent Purchase and Characterization

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Novozym 435 was obtained from Novozymes (Copenhagen, Denmark). Lipase PS-C was purchased from Sigma-Aldrich (Milwaukee, WI, USA). Sodium metal (large pieces in kerosene) was purchased from Fisher Scientific (Pittsburgh, PA, USA). 3,3′-Dipropylthiadicarbocyanine iodide (diS-C3(5)) and polymyxin B were purchased from Sigma-Aldrich. Tetrahydrofuran (THF), chloroform (CHCl3), methanol (CH3OH) and dimethyl sulfoxide (DMSO) were purchased from Fisher Scientific (Pittsburgh, PA, USA). All bacteria culture media and agars were purchased from Sigma-Aldrich (Milwaukee, WI, USA). All other chemicals and solvents were purchased in the highest available purity from Sigma-Aldrich and were used without further purification.
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6

Antimicrobial Assays with Cell Viability Markers

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Thiazolyl blue tetrazolium bromide (MTT), N-phenyl-1-naphthylamine (NPN), 3,3′-dipropylthiadicarbocyanine iodide (DiSC3(5)), SYTOX green, propidium iodide (PI), dimethyl sulfoxide (DMSO), cefotaxime, colistin, and ampicillin were purchased from Sigma-Aldrich (St. Louis, MO, USA). Vancomycin was purchased from LPS Solution (Deajeon, Korea). Sheep red blood cells (sRBCs) were purchased from MB Cell (Seoul, Korea).
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7

Fluorescent Staining and Cell Viability Assay for Vibrio spp.

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3,3′-Dipropylthiadicarbocyanine iodide (DiSC3(5)), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), Triton X-100, DMSO, glutaraldehyde solution, and lipopolysaccharides (LPSs) from E. coli O111:B4 were purchased from Sigma-Aldrich (Burlington, USA). DAPI, FM 4-64 dye, SYTOX green nucleic acid stain, SYTO 9 green fluorescent nucleic acid stain, phosphate-buffered saline (PBS) tablets, and ProLong glass antifade mountant were purchased from Thermo Fisher (Waltham, USA). The purified albofungin was further conjugated with FITC by a TGpeptide company (Jiangsu, China). Vibrio alginolyticus 1597 and V. parahaemolyticus 1482 strains were given by Prof. Chen Sheng from the City University of Hong Kong.
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8

Membrane Potential Assay for Staphylococcus aureus

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Staphylococcus aureus (ATCC 29213) cells were cultured overnight in TSB, then washed once and resuspended at an OD600nm of 0.1 in assay buffer containing 5 mM HEPES, 5 mM glucose and 0.1 M KCl, at pH 7.4. Bacteria were dispensed into a 96-well black plate and 3,3′-dipropylthiadicarbocyanine iodide [diSC3(5)] (Sigma-Aldrich Co., LLC, MO, United States) was added to a final concentration of 1 μg/mL and incubated with the cells for 30 min. Test peptide was then added to the final concentration 1-50 μg/mL, the mixture incubated for 30 min and fluorescence measured using a Cytation 5 microplate reader (BioTek) with an excitation wavelength of 622 nm and emission at 670 nm.
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9

Fluorescent Staining and Cell Viability Assay for Vibrio spp.

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3,3′-Dipropylthiadicarbocyanine iodide (DiSC3(5)), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT), Triton X-100, DMSO, glutaraldehyde solution, and lipopolysaccharides (LPSs) from E. coli O111:B4 were purchased from Sigma-Aldrich (Burlington, USA). DAPI, FM 4-64 dye, SYTOX green nucleic acid stain, SYTO 9 green fluorescent nucleic acid stain, phosphate-buffered saline (PBS) tablets, and ProLong glass antifade mountant were purchased from Thermo Fisher (Waltham, USA). The purified albofungin was further conjugated with FITC by a TGpeptide company (Jiangsu, China). Vibrio alginolyticus 1597 and V. parahaemolyticus 1482 strains were given by Prof. Chen Sheng from the City University of Hong Kong.
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10

Antimicrobial Susceptibility Assay

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SDS, TFE, thiazolyl blue tetrazolium bromide (MTT), NPN, 3,3′-dipropylthiadicarbocyanine iodide (DisC3-5), SYTOX green, propidium iodide (PI), dimethyl sulfoxide, meropenem and polymyxin B were purchased from Sigma-Aldrich (St. Louis, MO, USA). Vancomycin was purchased from LPS solution (Daejeon, South Korea).
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