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Widefield microscope

Manufactured by Zeiss
Sourced in Germany

The Zeiss Widefield Microscope is an optical instrument designed for broad-field observation and analysis of samples. It provides a wide field of view, allowing users to examine larger areas of a specimen simultaneously. The microscope features high-quality lenses and optical components to deliver clear, high-resolution images for various applications.

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23 protocols using widefield microscope

1

2D Gel Analysis of Yeast Strains

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2D gel analysis was performed as previously described (Branzei et al., 2006 (link)). ubc9-10,
sgs1-sim, and wild-type cells were imaged on confocal
fluorescence Leica or Zeiss wide-field microscopes using standard methods. Both
procedures are described in detail in the Supplemental Experimental
Procedures
.
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2

2D Gel Analysis of Yeast Strains

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2D gel analysis was performed as previously described (Branzei et al., 2006 (link)). ubc9-10,
sgs1-sim, and wild-type cells were imaged on confocal
fluorescence Leica or Zeiss wide-field microscopes using standard methods. Both
procedures are described in detail in the Supplemental Experimental
Procedures
.
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3

Vascular Imaging of Zebrafish Embryos

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At 24 hpf, CSN5i-3 was added to the water of Tg(fli1:GFP)y1casper zebrafish embryos to treat them for 48–72 hours with the compound. Zebrafish embryos were subsequently injected with ~1 nl of a 2 mg/ml solution of 70 kDa TMR dextran (#D1818) (Thermo Fisher Scientific) into the vasculature at the intersection of the common cardinal vein, the posterior cardinal vein and the primary head sinus using a Pneumatic PicoPump (#SYS-PV820) (World precision instruments). During injection and imaging, the zebrafish embryos were anaesthetized in 0.02% (w/v) buffered 3-aminobenzoic acid methyl ester (pH 7.0) (Tricaine) (#A5040) (Sigma-Aldrich). For live imaging, zebrafish embryos were mounted in an uncoated 8-well μ-slide (#80827) (Ibidi) in 1.5% low melting point agarose dissolved in egg water (60 μg/mL sea salts (Sigma-Aldrich; S9883) in MilliQ) with addition of 0.02% (w/v) buffered 3-aminobenzoic acid methyl ester (pH 7.0) (Tricaine) (#A5040) (Sigma-Aldrich). Zebrafish embryos were imaged after 20 minutes using a Zeiss wide field microscope at 10x magnification.
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4

Immunofluorescence Staining of Frozen Tissues

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For immunofluorescence, samples frozen in OCT were cut, fixed with cold acetone (Fisher Scientific) or 10% Neutral Buffered Formalin (Fisher Scientific), and incubated with primary antibodies as above overnight at 4°C. Subsequently they were incubated with Cy5-conjugated secondary antibodies (Jackson Immunoresearch, West Grove, PA) and counterstained with the nuclear stain 4',6-diamidino-2-phenylindole (DAPI; Invitrogen). Slides were imaged with a Zeiss wide field microscope, with 4–5 representative images taken per sample. For blood vessel staining, the percentage VE-cadherin positive area per image was calculated using Image J (NIH). When photos of stained tissue are shown in figures, they are representative images, with quantification values in the middle of the range.
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5

Quantifying Alveolar Morphology in Murine Lung Tissue

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Pictures of H&E-stained distal lungs were acquired using a Zeiss widefield microscope (AxioImager). Alveolar spaces, thickness of alveolar walls, and length of secondary septae were measured using ImageJ (https://imagej.nih.gov/ij/) according to the American Thoracic Society guidelines70 (link). A minimum of five representative, non-overlapping fields of view from lungs of at least three mice from each group were evaluated.
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6

Oxytocin Modulation of PPG Neurons

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Coronal brainstem slices (200μm) were obtained from PPG-Cre:GCaMP3 mice and used to assess the effects of bath-applied oxytocin on PPGNTS neuron calcium dynamics using a previously-optimised protocol 43 (link). Oxytocin was dissolved in aCSF (3mM KCl, 118mM NaCl, 25mM NaHCO3, 5mM glucose, 1mM MgCl2, 2mM CaCl2; pH 7.4) to give a bath concentration of 100nM, based on reports that this concentration elicits robust activation of vagal afferent neurons under ex vivo conditions 44 (link). Slices were superfused with aCSF for ≥10 minutes, with the final 5 minute period prior to oxytocin application used to determine baseline fluorescence intensity. Slices were then superfused with oxytocin solution for 3-5 minutes, washed with aCSF for ≥10 minutes, then finally superfused with 100μM glutamate for 1 minute as a positive control to confirm imaged neurons were healthy and responsive to glutamatergic input. GCaMP3 fluorescence was excited at 460 ± 25 nm using an LED light source, for 250ms every 5 seconds. Imaging was conducted using a widefield microscope (Zeiss) with 40x water immersion lens and captured at 12-bit on a CCD camera (QClick, QImaging). Data were obtained from 8 experiments (i.e. recordings from single slices) from 3 mice.
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7

Tissue Glucose Uptake Imaging Protocol

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At the end of each perfusion, two identical tissue samples with 5 mm length were acquired from each organ (kidney, heart and cerebral cortex) using a 3 mm biopsy punch (Miltex, Integra) and were placed in cold PBS (fresh) and PFA (fix overnight) solutions, respectively. The fresh tissues and the fixed controls were incubated in 2-NBDG working solution (Cayman, 11046, 100 μM) for 30 min at 37 °C followed by 15 min of wash in PBS. The images were acquired immediately using a widefield microscope (Zeiss) under a ×2.5 objective (Ex: 465–495 nm, Em: 520–560 nm) with exposure time of 295 ms (kidney and heart) and 50 ms (cerebral cortex). Images were analysed using ImageJ to quantify the mean intensity of the region of interest with normalization based on the fixed controls.
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8

Long-Term Cell Motility Tracking

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Cells were seeded in Lab-Tek glass-bottomed eight-chambered slide (155411, Thermo Scientific) and pretreated as indicated. The chambered slide was then placed on the contained stage of microscope with 5% CO2 at 37 ℃. Cell motility was monitored with the widefield microscope (Zeiss, Germany). Cell positions were recorded at every 10-min interval over a period of 24 h and then processed with Track Object Tool in Metamorph analysis software.
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9

Senescence Inhibition by BNC-G-HDE2 Membrane

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The anti-senescence activity of the BNC-G-HDE2 membrane was evaluated using the β-galactosidase (β-gal) staining assay. The BNC-G membrane was used as control. To prepare the membranes extracts, sterilized samples (10 cm2) were incubated in 10 mL of complete DMEM medium as previously described for the cytotoxicity assay.
NIH/3T3 cells were seeded in 12-well plates at a density of 2.5 × 104 cells/well and allowed to stabilize for 24 h. Subsequently, 12.5 µM etoposide was used to induce cellular senescence in NIH/3T3 for 24 h. Etoposide-stimulated cells were then treated with the BNC-G-HDE2 membrane extract for another 24 h. As control, non-treated cells were incubated with DMEM medium or with extracts of BNC-G and BNC-G-HDE membranes. After incubation, culture medium was removed, and cells were washed with PBS and marked with β-gal solution prepared as described by the manufacturer (Cell Signaling Technology, Danvers, MA, USA). The analysis of the positive cells for senescence was performed at 20× magnification using a widefield microscope (Carl Zeiss, Oberkochen, Germany). At least 3 independent experiments were performed in replicate, and the percentage of β-gal-positive cells was determined using four microscopic images.
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10

Cytospin Preparation of Primary AML Cells

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Primary AML patient cells (40,000) were resuspended in 200 μL PBS. Slides and filters were placed into appropriate slots with the cardboard filters facing the center of the cytospin. Cells were added to the cytofunnel and spun at 700 rpm for 10 minutes. Filters were removed from the slide without disturbing the cells. Slides were stained with the Wright–Giemsa Stain Kit (Jorgensen Labs, #J0322A). Images were captured using a Zeiss Widefield Microscope.
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