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37 protocols using toluidine blue solution

1

Murine skin biopsy staining protocol

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Murine skin biopsies were taken at the injection site ~1 h post treatment with a 50 μL intradermal injection of either C48/80 (10 μg), a pre-mixed combination of C48/80 (10 μg) and ssON (25 μg), or saline into the nape of the neck, and embedded in OCT (ThermoScientific). Biopsies were cut into 8 μM sections using a Cryostat (Leica), transferred onto SuperFrost slides (ThermoFischer), and fixed with ice-cold 100% acetone. Sections were stained as previously described (59 , 60 ). Briefly, sections were then hydrated for 1–5 min in deionized water and stained with freshly prepared Toluidine blue solution (Sigma Aldrich) for 75 s. Sections were rinsed in three consecutive changes of distilled water, dehydrated using 95 and 100% ethanol, submerged in xylene, and mounted using DPX mounting medium (Sigma Aldrich).
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2

Evaluating Fibroblastic Colonies of MSCs

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The formation of fibroblastic colonies (CFU-F) by MSCs was evaluated according to a previous study.22 (link) Briefly, a total of 1.5 × 106 all nuclear cells (ANCs) from the bone marrow were seeded in 60 mm culture dishes and cultured for 16 days. The colonies were washed with PBS, fixed with 2% paraformaldehyde (PFA; Sigma-Aldrich, USA), and stained with 0.5% toluidine blue solution (Sigma-Aldrich, USA). The number of cell colonies was counted under a microscope, and groups of more than 50 cells were considered colonies.
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3

Histological Analysis of Chondrogenic Spheroids

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MSC and chondrogenic spheroids were fixed with 4% paraformaldehyde and sectioned with paraffin embedding to obtain 10 μm sections. H&E staining was performed on the sections using Leica Autostainer XL (Leica, Germany). For sGAG visualization using Toluidine Blue O staining, sections were incubated in a Toluidine Blue solution (0.1% in DI water, Sigma Aldrich, MO) at room temperature for 2 min. The dye was then removed and samples were washed twice with DI water, followed by dehydration with ascending alcohol and clearing with xylene. All samples were mounted and imaged using the EVOS microscope.
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4

Cell Migration Assay in Boyden Chamber

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The cell migration assay was performed in a modified 48-well Boyden chamber using polycarbonate nucleopore membrane with 8-μm pore size (Whatman, Piscataway, NJ, USA). Briefly, subconfluent tumor cells were trypsinized, and 20,000 cells/well were plated onto the upper chamber of each well. Fibronectin (Sigma-Aldrich) at a concentration of 100 μg/ml was added into the serum-free medium in the lower chambers. Cells were allowed to migrate for 6 hours (HT168-M1, HT1080) or 20 hours (HT25, HT29, PE/CA PJ15). Then, the upper surface of the membrane was wiped with PBS to remove any non-migrated cells. Cells that had migrated to the lower surface of the membrane were fixed with methanol, stained with Toluidine-blue solution (Sigma-Aldrich), and counted under a microscope. To measure the migration activity of cells within individual wells, the mean number of cells from five randomly chosen fields was determined at 20x magnification with an eyepiece equipped with a square grid. The results for each culture condition were expressed as the mean ± SD of six individual wells.
To avoid the effect of reoxygenation on migration capacity, HT168-M1 cells were migrated in hypoxia without 72-hour hypoxic preincubation as well.
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5

Staining and Imaging Cryosectioned Mouse Cerebellum

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Cryosections were thawed, washed with phosphate-buffered saline (PBS) for 5 min, and then transferred in Toluidine blue solution (0.5% w/v in PBS) (Sigma-Aldrich) for 20 sec. Excessive staining was washed off in PBS for as long as necessary, sections were dehydrated through successive dilutions of ethanol (from 70% to 100%), followed by 2 x 10 min washes with Histolene clearing reagent (CellPath). Samples were mounted with DPX mounting medium (Sigma-Aldrich) and observed under a Zeiss-Axiophot up-right light microscope. The average thickness of ML and average cerebellum area from 5 mice per genotype, were calculated.
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6

Histochemical Analysis of Tissue Spheroids

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All groups of TSs were cultured for 3 weeks, de-crosslinked, fixed with 4% paraformaldehyde, and embedded in paraffin using an automatic tissue processor (TP 1020, Leica, Germany). Next, TSs were gradually dehydrated in alcohol, cut into 8 μm sections, and placed onto charged slides. Sections were then dewaxed using Leica Autostainer XL (Leica, Germany) and underwent Toluidine Blue O and Picrosirius Red/Fast Green staining according to standard protocols for detection of GAGs and collagen, separately. Briefly, for Toluidine Blue O staining, sections were incubated in a Toluidine Blue solution (0.1% in DI water, Sigma Aldrich, MO) at room temperature for 2 min.[52 ] The dye was then removed and samples were washed twice with DI water. After dehydration with ascending alcohol and clearing with xylene, coverslips were mounted to the slides using Xylene Substitute Mountant (Thermo Fisher Scientific Inc., PA). Picrosirius Red/Fast Green staining solution was prepared by dissolving 0.1% direct Red 80 and 0.1% Fast Green FCF in saturated aqueous picric acid (1.2% picric acid in water, Sigma Aldrich, MO). Picrosirius Red/Fast Green solution was then applied to the sections and sections were incubated for 1 h.[53 (link)] Samples were rinsed with DI water, dehydrated with alcohol, cleaned with xylene, and then mounted. Finally, samples were imaged using a BX51 microscope (Olympus, Japan).
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7

Toluidine Blue Staining Protocol

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Cells or tissue sections were fixed with 10% neutral buffered formalin at 25 °C for 10 min, washed with distilled water, incubated with 0.05% toluidine blue solution (Sigma) for 30 min at 25 °C, and washed 3 times with distilled water.
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8

Histological Analysis of Chondrogenic Spheroids

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MSC and chondrogenic spheroids were fixed with 4% paraformaldehyde and sectioned with paraffin embedding to obtain 10 μm sections. H&E staining was performed on the sections using Leica Autostainer XL (Leica, Germany). For sGAG visualization using Toluidine Blue O staining, sections were incubated in a Toluidine Blue solution (0.1% in DI water, Sigma Aldrich, MO) at room temperature for 2 min. The dye was then removed and samples were washed twice with DI water, followed by dehydration with ascending alcohol and clearing with xylene. All samples were mounted and imaged using the EVOS microscope.
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9

Histological Analysis of Murine Skin

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Following fixation of Balb/C mice skin tissues with 10% formalin for 48 h, the tissues were embedded in paraffin wax and sliced into 4 μm-thick slices on glass slides. The sections were stained with hematoxylin and eosin (H&E, Sigma-Aldrich) to assess skin tissue integrity or toluidine-blue solution (Sigma-Aldrich) to observe infiltrated mast cells. This was done using an optical microscope equipped with the Leica Application Suite (Leica Microsystems, Glattbrugg, Switzerland).
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10

Laser Capture Microdissection of Mouse Retina

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LCM was performed with the Leica LMD7000 system and LMD application version 7.5 (Leica Microsystems, Buffalo Grove, IL, USA). Enucleated mouse eyes were frozen in O.C.T Compound (Sakura Finetek, Torrance, CA, USA) and cut into 20 μm sections on Frame slides (Leica Microsystems). The sections were fixed with 75% ethanol for 30 s, washed with nuclease-free water (Life Technologies) for 30 s, stained with 0.02% toluidine blue solution (Sigma-Aldrich) for 20 s, and washed with nuclease-free water for 30 s. The sections were then dehydrated with 75 and 95% ethanol for 30 s each, and twice with 100% ethanol for 30 s. The tissues from the ONL, subretina (where the sensory retina detached from the RPE), and the RPE (with choroid) were cut by laser and collected into 0.5 ml tubes containing RNAlater (Life Technologies).
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