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15 protocols using accutof jms t100lc

1

NMR and Mass Spectrometry Analysis

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Chemicals were purchased
from Wako Pure Chemical Industries, Ltd., and used as received without
further purification. 1H NMR and 19F NMR spectra
were measured with JEOL ECA (600 MHz). Mass spectra were measured
with mass spectrometers (JEOL AccuTOF JMS-T100LC for ESI and JMS-700
MStation for EI).
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2

JEOL AccuTOF DART+ Mass Spectrometry

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The mass spectrometer instrument was a JEOL AccuTOF: JMS-T100LC with ionization mode DART+.
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3

ESI-MS Analysis of Compounds

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High-resolution mass spectra (ESI-MS) were obtained using an Agilent 1100 HPLC coupled to a JEOL AccuTOF (JMS-T100LC) (Peabody, MA, USA). All isolated compounds were prepared in MeOH and injected directly into a 0.3 mL/min stream of either MeOH or 80% MeOH/20% DI H20. Twenty microliters of sample (approximately 0.1 mg/mL) were injected manually at 0.5 min while mass drift compensation standards [L-tryptophan (negative ion), PEG (positive ion)] were injected at 1.5 min over the course of a 2 min run.
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4

Comprehensive Chemical Characterization

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High-resolution mass spectra were recorded using a JEOL AccuTOF JMS T100LC instrument fitted with an electrospray ion source. The spectrum was recorded over the mass range 50–1000 m/z.
UV-Vis absorption spectra were recorded on-line during HPLC analysis over the wavelength range 240–600 nm in steps of 2 nm.
NMR samples were prepared by dissolving the isolated compounds in hexadeuterated dimethylsulfoxide (99.9 atom % D, Sigma-Aldrich). The 1D 1H and the 2D 1H-13C HMBC, 1H-13C HSQC, 2D 1H-1H COSY and 1H-1H ROESY NMR experiments were obtained at 600.13 MHz and 150.90 MHz for 1H and 13C, respectively, at 298K on a Bruker 600 MHz instrument equipped with a cryogenic probe.
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5

Spectroscopic Characterization of Compounds

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NMR spectra, including
bidimensional, were recorded in CD3OD, CDCl3, or DMSO-δ6 solution on a Bruker Avance III HD
or Bruker BioSpin (Billerica, MA) spectrometer at either 700 or 400
MHz (1H) and 175 or 100 MHz (13C), using TMS
as an internal standard. High-resolution mass spectra, HRMS (ESI-TOF+), were acquired with a JEOL AccuTOF JMS-T100LC (Peabody,
MA) spectrometer. Optical rotation was obtained with an Anton Paar
MCP 150 polarimeter. Gas chromatography–mass spectrometry (GC–MS)
determinations were made using an Agilent 5975C system equipped with
a 30 m DB-5MS capillary column (0.25 mm i.d.; 0.25 mm). Preparative
HPLC was carried out with a Waters instrument (Milford, MA) equipped
with a 2535 pump and a 2998 photodiode array detector, using an XBridge
Prep Shield RP-C18 (19.0 × 250 mm2, 5 mm particle
size) packed column, and different gradient systems of MeCN and 0.1%
aqueous formic acid, at a flow rate of 17.06 mL/min. Control of equipment,
data acquisition and processing, and management of chromatographic
information were performed using the Empower 3 software package. Column
chromatography (CC) was carried out on silica gel 60 (Merck, Darmstadt,
Germany) or Sephadex LH-20 (GE Healthcare, Little Chalfont, Buckinghamshire,
U.K.). Thin-layer chromatographic (TLC) analyses were performed on
silica gel 60 F254 plates (Merck) and visualized using a Ce2(SO4)3 (10%) solution in H2SO4.
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6

Synthesis and Characterization of Benzimidazole and Imine

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All chemical reagents used for the synthesis of benzimidazole and subsequent imine were used as received and without further purification. Elemental analyses were performed using Flash EA 1112 Series CHN Analyzer. A Shimadzu Affinity 1 FT-IR spectrometer was used to obtain the infrared spectra. IR data are reported using the following abbreviations: vs = very strong; s = strong; m = medium; w = weak; sh = shoulder; br = broad. 1H and 13C{1H} NMR spectra were obtained on a Bruker Avance II 400 spectrometer using DMSO-d6 as a solvent at 25 °C. The following abbreviations were used: s = singlet; d = doublet; t = triplet; m = multiplet. The mass spectrum of the benzimidazole was recorded on a Shimadzu-GCMS-QP2010 at 70 eV by electronic impact (EI) ionization, while the mass spectrum of the derived imine was obtained by direct analysis in real time (DART) ionization system on a JEOL AccuTOF JMS-T100LC.
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7

Characterization of Chemical Reagents

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All solvents were reagent grade. CH2Cl2 was distilled from CaH2. All commercial reagents were of the highest purity available. Amino acid derivatives were purchased from Watanabe Chemical Industries. Other chemicals were purchased from Aldrich, Wako chemical and Nacalai tesque. Optical rotations were determined with a JASCO DIP-371 polarimeter at the sodium D line. IR spectra of sample were obtained as films with a HORIBA FT-720 spectrometer. 1H (400 and 500 MHz) and 13C NMR (100 and 125 MHz) were determined on a JNM-ECX400 and JNM-ECX500. Chemical shifts are reported in ppm with reference to tetramethylsilane [1H NMR: TMS (0.00)], or solvent signals [1H NMR: CDCl3 (7.26), MeOH-d4 (3.30); 13C NMR: CDCl3 (77.16), MeOH-d4 (50.05)]. Mass spectra were recorded on a JEOL AccuTOF JMS-T100LC (ESI). Analytical TLC was performed on Merck Silica gel 60F254. Crude products were purified by column chromatography on Silica Gel 60 N [Kanto, particle size, (spherical, neutral) 63–210 μm or 100–200 μm]. HPLC system (monitored at 220 nm) equipped with Cosmosil 5C18 AR-II column (4.6 × 150 mm) using MeCN in 0.1% aqueous TFA. Absorbance for enzyme inhibition assay was measured with the HITACHI F-7000. Absorbance for cytotoxicity assay was measured with the CORONA MTP-310Lab.
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8

Phytochemical Profiling by DART-MS

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The phytochemical profile of the extract was recorded on a DART-MS (JEOL-AccuTOF JMS-T100LC). The DART-MS was operated with a resolving power of 6000 (full-width at halfmaximum). The DART ion source was operated with helium gas at 400 °C at a flow rate of approximately 4.0 L/min. A mass spectrum of polyethylene glycol (PEG) 600 solution was used as reference standard for exact mass calibration. The PEG solution and the extract were positioned in the gap between the DART source and mass spectrometer for measurements and, were introduced into the DART Helium plasma using the closed end of a borosilicate glass melting point capillary tube [6, 7] . Each sample was introduced to the DART ion source three times. The elemental composition of selected peaks were determined using the Mass Centre Main software (version 1.3m; JEOL Japan).
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9

Spectroscopic Analysis of Organic Compounds

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IR spectra were recorded on Tensor 27 spectrophotometer (Bruker, Billerica, MA, USA). NMR spectra were obtained on an Avance III 400 MHz or 700 MHz spectrometer (Bruker Billerica, MA, USA). EIMS were obtained on a MStation JMS-700 mass spectrometer (Jeol Ltd., Tokyo, Japan) and The AccuTOF JMS-T100LC (Jeol Ltd., Tokyo, Japan). CC (Sev-Prendo, Puebla, México) was carried out with silica gel 60 (Macherey-Nagel, Düren, Germany). SC was carried out with sephadexTM LH-20 (GE Healthcare Bio-Sciences AB, Uppsala, Sweden). To monitor CC and SFpre-coated TLC-sheets ALUGRAM®Xtra SIL G/UV254 with silica gel 60, layer 0.20 mm (Macherey-Nagel, Düren, Germany).
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10

Spectroscopic Characterization of 2-COOH

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All reagents and organic solvents were used as received from commercial resources without further purification. 1,3-dihydro-1-hydroxy-2,1-benzoxaborole-5-carboxylic acid (2-COOH) was synthesised according to the literature method (Scheme S1).16 (link) Milli-Q water was used for spectroscopic measurements.
1H and 13C nuclear magnetic resonance (NMR) spectra were acquired with a JEOL JNM-ECA 500 spectrometer (JEOL, Japan) at room temperature. High resolution electrospray ionization mass spectra (ESI-HRMS) were measured using a JEOL The Accu-TOF JMS T100LC (JEOL, Japan). The pH of solutions was measured by a HORIBA pH electrode 9618S-10D connected to a HORIBA pH meter F-52 (Horiba, Japan). UV-vis absorption spectra were obtained at 25 °C using a Hitachi U-3900H spectrophotometer (Hitachi, Japan) equipped with a temperature controller (Hitachi, Japan). Fluorescence spectra were recorded at 25 °C using a Hitachi F-7000 fluorescence spectrophotometer (Hitachi, Japan) equipped with a temperature controller (Hitachi, Japan) and an EYELA CCA-1111 (EYELA, Japan). Induced circular dichroism spectra were recorded at 25 °C using a JASCO J-820 spectrophotometer (JASCO, Japan) equipped with a Peltier temperature controller (JASCO, Japan) and an EYELA Cool Ace CA-1111 (EYELA, Japan) under a nitrogen atmosphere.
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