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6 protocols using rgfp966

1

NSCLC Cell Line Cultivation and HDAC Inhibitor Treatments

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This study was performed using the human non-small cell lung cancer cell lines: NCI-H23 and A549. These cell lines were obtained from the Korean Cell Line Bank (Seoul, Korea) and were maintained in an RPMI-1640 medium, which was supplemented with 10% fetal bovine serum (Gibco, Grand Island, NY, USA), 2 mM L-glutamine, 100 mg/mL streptomycin, and 100 U/mL penicillin. The NK-92 cell line was obtained from the American Type Culture Collection (Rockville, MD, USA) and maintained in an alpha-minimum essential modified medium, which was supplemented with 12.5% (v/v) fetal bovine serum, 12.5% (v/v) horse serum, 2 mM L-glutamine, 0.1 mM 2-mercaptoethanol, 200 U/mL recombinant human interleukin-2, 100 µg/mL streptomycin, and 100 U/mL penicillin. All cell lines were cultured at 37 °C in a humidified atmosphere and at 5% CO2. Five HDAC inhibitors were used. The inhibitor FK228 was purchased from Selleckchem (Houston, TX, USA); the inhibitors RGFP966, MC1568, and Tubacin were obtained from Sigma-Aldrich (St. Louis, MO, USA); and PCI34051 was purchased from R&D Systems (Minneapolis, MN, USA) (Figure 1).
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2

Isolation and Culture of Murine Chondrocytes

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Chondrocytes were isolated from metatarsals of 1 day-old mice as
previously described (41 ). The bones were
cleaned from skin and muscles as much as possible, incubated in 0.2%
trypsin versene (Thermo Fisher, # 15040066) for 2 hours with periodical
vortexing, and then incubated with 0.2% collagenase for 3 hours with
periodical vortexing. All incubations were done in 37°C. Cells were
isolated using 70 micron strainer and seeded in monolayer at
5×104/cm2 plate for experiments. For Hdac
inhibitor experiments, vorinostat (10μM, Sigma) and RGFP966
(10μM, Sigma) were added to immature mouse epiphyseal cell micromasses
(29 (link)) every three to four days during
a 17-day culture.
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3

HDAC Inhibition Regulates Xist Induction

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For HDAC inhibition experiments, cells were treated with either HDAC1/2i (BRD6688, Cayman Chemical Company, 1404562-17-9) or HDAC3i (RGFP966, Sigma SML1652) at 10 uM final concentration. HDAC inhibition was initiated 24 hr prior to induction of Xist with doxycycline and continued for 24 hr during Xist induction (48 hr total). –HDACi samples were treated with DMSO as a control.
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4

Ovalbumin-Induced Inflammation: Adjuvants and Inhibitors

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Ovalbumin (Ova) was purchased from Sigma-Aldrich (USA). Complete Freund’s adjuvant (CFA) was prepared by adding heat-killed Mtb.H37 RA (BD Biosciences, CA, USA) to incomplete Freund’s adjuvant (IFA; Sigma-Aldrich, Germany; 1 mg Mtb/ml). 2-Deoxy-D-glucose (2-DG, #D8375), DMSO (#S-002-M), phorbol-12-myristate-13-acetate (PMA, #P1585), HDAC3-inhibitor RGFP966 (#SML1652), sodium butyrate (BA, #303410), sodium propionate (PA, #P1880), trichostatin A (TSA, #T8552), and Lipopolysaccharides (LPS) were all purchased from Sigma-Aldrich (USA). Selective GPR43/FFAR2 agonist (S-2-(4-chlorophenyl)-3,3-dimethyl-N-(5-phenylthiazol-2-yl)butanamide, #371725) was purchased from Merck (Germany). Sodium butyrate (BA) for application in animals was freshly prepared for every use by dilution with sterile PBS for i.p. injections or designated drinking water from the animal facility. Sodium butyrate solution (BA, #TR-1008-G) for cell culture experiments was purchased from Merck (Germany) and working solutions were freshly prepared. FACS-buffer (2% fetal calf serum (FCS) or bovine serum albumin (BSA) and 0.01% NaN in PBS) was freshly prepared at the laboratory.
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5

Histone Deacetylase Inhibitor Evaluation

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All chemicals Butyrate (1mM), Acetate (1mM), Propionate (1mM), SAHA (1μM), SBHA (20μM), TMP195 (10 μM), RGFP966 (20 μM), 1-NA (10 μM), tubacin (1μM), 1-naphthohydroxamic acid, bafilomycin A1, 3-MA, MHY1485) were purchased from Sigma-Aldrich, unless specified otherwise. TMP195 was acquired from Cellagen technology and Cayman chemical respectively. Recombinant human and murine M-CSF were purchased from PeproTech.
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6

Inducible XIST Expression in HT1080 Cell Line

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The HT1080 (male brosarcoma) cell lines with doxycycline inducible full length XIST cDNA constructs integrated into chromosome 8p have been described in previous publications (16, 17) . The XIST CRISPRmediated deletion constructs studied throughout this work were all created by targeted excision of speci c sequences from the Full length inducible XIST cDNA construct as described previously (13) . The additional deletion constructs Delta P MI, Exon 1, and Delta Delta, were generated through independent integration of partial XIST sequences into an 8p FRT integration site in the HT1080 cell line (17) . All XIST inducible constructs were under the control of a CMV promoter with a Tet repressor element as described previously (13, 17) . Induction of XIST was performed with 1µg/ml doxycycline, refreshed daily. All of the chemical inhibitors used in this assay were rst dissolved in DMSO and then added to culture media at the desired concentration. Inhibition of HDAC3 was performed using the chemical RGFP966 (Sigma-Aldrich) and the inhibition of all HDACs non-speci cally was performed using Trichostatin A (TSA;
Sigma-Aldrich). Inhibition of the catalytic activity of KMT5A (also known as PR-SET7/SET8/SETD8) was performed using the chemical ryuvidine from Abcam. Inhibition of PRC2 and PRC1 was performed using GSK343 and PRT4165 (both from Sigma-Aldrich) as described previously (13) .
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