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12 protocols using 70 μm nylon mesh filter

1

Multiparametric Flow Cytometry for Immune Cell Analysis

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Flow cytometry was performed with the FACSAria II flow cytometer, and analysis was performed with FACSDiva 6.1.1 software (BD Biosciences) or FlowJo 8.8.4 software (TreeStar, Ashland, Ore). For spleen and BM analysis, cells were harvested, minced, and then passed through a 70-μm nylon mesh filter (BD Falcon). Erythrocytes were lysed with ammonium-chloride-potassium buffer, and the resulting cell suspension was counted and maintained in ice. Cells were stained in PBS plus 1% BSA at a concentration of 2 × 106 cells per well and fixed in 1% PFA. Mouse antibodies included the following: CD11b–allophycocyanin (APC; M1/70), Ly6G–phycoerythrin (PE; 1A8), Ly6C–fluorescein isothiocyanate (HK1.4), CD19 (6D5)/CD3 (145-2C11)/NK1.1 (PK136)–Biotin, CD11c-PE (N418), PDCA-1–APC (927), Siglec H–PE (551), CD45R/B220–fluorescein isothiocyanate (RA3-6B2), CD23–PE-Cy7 (B3B4), CD21-APC (7E9), CD1d-PE (K253), and CD69-PE (H1.2-F3; BioLegend, San Diego, Calif). Dead cells were excluded by using the LIVE/DEAD Fixable Cell Stain Kit (Invitrogen). Gates were first set on live cells and singlets.
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2

Isolation and Culture of Murine Bone Marrow-Derived Mesenchymal Stem Cells

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Briefly, after sacrificing the adult mice, whole body was rinsed in 70% (v/v) ethanol for 2–3 min. Femurs and tibiae were dissected and carefully cleaned from muscle, connective tissue and residual soft tissues. Bones were then transferred to a sterile culture dish containing α-MEM supplemented with 1× penicillin/streptomycin on ice. Two ends of each bone were excised and a syringe needle (27-gauge) was inserted into bone cavity to flush out bone marrow with α-MEM. This process was repeated several times until the color of the bones turned from red to white. To get rid of any bone debris, the cell suspension was filtered through a 70 μm nylon mesh filter (BD Falcon, USA). Cells were cultured in cell culture plate in α-MEM supplemented with 10% fetal bovine serum (FBS; Sigma), 100 μg/ml penicillin and 100 μg/ml streptomycin (Gibco). Plates were then incubated at 37 °C with 5% CO2 in a humidified chamber for 5 days. Non-adherent cells were removed by changing the medium and the BM-MSCs were either directly used or kept frozen for future experiments.
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3

Culturing and Assaying Mouse Cortical Neurons

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Mouse cortical neurons were prepared from E16.5 mouse embryos. The cortex was mechanically dissociated by passing through a glass pipette for twenty times and then filtered through a 70-μm nylon mesh filter (BD Biosciences). Cells were plated onto plastic culture plates coated with 30 μg/mL poly-L-lysine and 2 μg/mL laminin and cultured in Neurobasal Medium containing 10% FBS, 100 U/mL penicillin and streptomycin, and N2 supplement and B27 supplement (Invitrogen). The cells were kept at 37 °C in a humidified atmosphere of 5% CO2 and 95% air. p-Tau and Apomorphine (Cayman, Cat. #16094) were added into the culture medium at 6 D.I.V. cortical neurons. The Cell viability of 10 D.I.V. or 13 D.I.V. cortical neurons was assayed by a colorimetric procedure with cell counting kit-8 (Dojindo Laboratories, E-CK-A362) according to the manufacturer’s instructions.
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4

Tonsil and Adenoid Single-Cell Isolation

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Adenoids and tonsils were surgically removed, immediately placed in R10 media [RPMI-1640 (Lonza, CA, United States) supplemented with 10% fetal bovine serum (FBS, Gibco, MA, United States), 100 U/mL Penicillin/Streptomycin (Gibco, MA, United States), and 1% L-Glutamine (Gibco, MA, United States)] and transported to the laboratory for processing within 30 min. Tissues were cut manually into small pieces and disaggregated by mechanical disruption using a 70 μM nylon mesh filter (BD Biosciences, San José, CA, United States) to obtain a single-cell suspension. Disaggregated cells were washed twice in R10, and red blood cells were lysed using CK (Chloride-Potassium) lysis buffer (Lonza, MD, United States). Single-cell suspensions were manually counted and washed with phosphate-buffered saline (PBS, Lonza, CA, United States) prior to being subjected to flow cytometry-based immunophenotyping.
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5

Tissue Dissociation and SP Isolation

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Tissue dissociation and SP isolation were done as described previously.8 (link) The samples stored in liquid nitrogen were thawed at 37 °C and washed with Hank’s balanced salt solution (Life Technologies, UK). After dissociation using Liberase Blendzyme 3 (Roche, Basel, Switzerland) at a concentration of 0.8 Wunsch unit/ml during 1 h at 37 °C, the samples were filtered with a 70 μm nylon mesh filter (BD Biosciences, Erembodegem, Belgium) and gradient centrifugation based on 15% Percoll/Hank’s balanced salt solution (100 × g for 15 min). Finally, the pelleted cells were resuspended in HepatoZYME-SFM (Life Technologies, UK) with 1% penicillin/streptomycin (Life Technologies, UK) added to obtain a single-cell suspension.
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6

Detecting Dendritic Cells in Tumor Skin

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EG7 cells were injected subcutaneously. Eighteen hours later, to detect DCs in the skin, skin tissues were excised, cut into small pieces and digested with DNase I (0.1 mg/ml; Sigma) and collagenase Type IV (4 mg/ml; Gibco) for 2 h at 37 °C. The resulting cell suspensions were centrifuged, washed in PBS and passed through a 70-μm nylon mesh filter (BD Biosciences) to obtain single-cell suspensions. The single-cell suspensions were stained with PerCP-CyTM5.5-conjugated anti-CD45, PE-conjugated anti-MHC-II, APC-conjugated anti-CD11c (1:100; BD Biosciences) and FITC-conjugated anti-IFN-β (1:100; PBL Assay Science) antibodies for a flow cytometry assay.
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7

Adoptive Transfer of Spleen Lymphocytes and Immunoglobulins for Antitumor Efficacy

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Preparation of spleen lymphocytes was performed as previously reported44 (link). Briefly, the immunized or control mice were killed on day 7 after the third immunization. Single-cell suspensions were obtained from spleens through a 70-μm nylon mesh filter (BD Biosciences), and lymphocytes were enriched by lymphocyte separation medium (Dakewe Biotech Company) according to the manufacturer’s instructions. To assess the efficacy of T cells in antitumor in vivo, spleen lymphocytes (1 × 107) from donor mice on day 7 after the third immunization were adoptively transferred intravenously into recipient mice one day before and three days after the tumor inoculation (3 × 106). Immunoglobulins were purified from the pooled sera derived from the immunized or control mice by affinity chromatography (CM Affi-gel Blue Gel Kit; Bio-Rad). To assess the efficacy of Immunoglobulins in antitumor activity in vivo, the purified Immunoglobulins (50 mg/kg) were adoptively transferred intravenously one day before mice were challenged with 3 × 106 tumor cells and then treated twice per week for 3 weeks.
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8

Isolation and Analysis of Immune Cells

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Following euthanasia, blood samples and spleens were harvested from PHN rats and control rats. Blood samples anticoagulated with ethylene diamine tetraacetic acid (EDTA-K2) were collected to separate peripheral blood mononuclear cells (PBMCs). The dissected spleens were homogenized with the tip of a syringe plunger. The homogenates were passed through a 70-μm nylon mesh filter (BD Biosciences, Franklin Lakes, USA), and single-cell suspensions were obtained. Mononuclear cells from peripheral blood or spleen were separated using peripheral blood mononuclear cell isolation kits or spleen lymphocyte isolation kits (both from TBD Science, Tianjin, China) for rats, respectively. The isolated mononuclear cells were used for reverse transcription quantitative polymerase chain reaction (RT-qPCR) or flow cytometry (FC) analysis.
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9

Characterization of T-cell Responses to XPa

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Spleens were harvested from female C57BL/6 mice (4–6 weeks old) that were previously immunized with XPa one week before being sterilized. Cell suspensions were generated by filtration through a 70-μm nylon-mesh filter (BD Biosciences), and lymphocytes were enriched via specific separation medium and density-gradient centrifugation and isolated with an EasySep Mouse T cell Isolation Kit (19851, STEMCELL Technologies). Then, T cells were stained with 1 mM carboxyfluorescein (CFSE, 423801, Biolegend Inc., San Diego, CA, USA), and CFSE-stained T cells were cocultured with DCs treated with saline, LPS (100 ng/mL; Sigma L9143), XPa (10 MOI), XPa sup (same volume of XPa), XPa + DNase I (10 MOI), or CD3/CD28 (Dynabeads Mouse T-Activator CD3/CD28, Gibco, 11452D) at a DC:T-cell ratio of 1:10. After 72 h of coculture, cells were collected for flow cytometry analysis, and culture supernatants were collected for cytokine IFN-γ assays.
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10

Isolation and Characterization of Skin Cells

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Blood was collected by cheek bleeding or intracardial puncture. Red blood cells, bone marrow (BM) cells, and spleen cells were lysed in an ammonium chloride buffer and prepared as already described.40 (link) For the skin cell preparations, ears were split into the dorsal and ventral layers, minced, and digested for 30 minutes at 37°C in a shaking incubator (150 rpm) in Iscove modified Dulbecco medium with 5% FCS (Gibco, ThermoFischer) containing 2 mg/mL of collagenase IV and 100 μg/mL of DNAse I (Sigma-Millipore). Digestion was stopped by adding 5 mM EDTA and the tissue was filtered through a 70-μm nylon mesh filter (BD Biosciences, Franklin Lakes, NJ). For some experiments, ears were digested by using 0.25mg/mL of Liberase TM (Roche, Switzerland) for 20 minutes at 37°C and dissociated with a GentleMACS dissociator (Miltenyi, Germany).
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