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Xplore 3d tem tomography software

Manufactured by Thermo Fisher Scientific

Xplore 3D TEM tomography software is a tool used for analyzing and visualizing three-dimensional (3D) data obtained from transmission electron microscopy (TEM) imaging. The software's core function is to process and reconstruct 2D TEM image series into 3D models, enabling researchers to study the internal structure and morphology of their samples in greater detail.

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2 protocols using xplore 3d tem tomography software

1

Electron Microscopy of Fly Receptors

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The serial sections (250 nm) were prepared using a Leica Ultracut UCT or Leica EM UC7 microtome and collected on Formvar-coated copper slot grids. For haltere receptors, cross-sections were collected to facilitate data after processing, e.g., microtubule tracing and alignment. For leg receptors, we collected consecutive lateral sections in most cases because the exoskeleton of fly legs often separated from the embedding resin, and the cross-sections, usually with a small tissue area, had a large chance of getting lost or distorted. Post-staining was performed with 2% uranyl acetate in 70% methanol, followed by 0.4% lead citrate (EMS; 17900). 15-nm gold nanoparticles (BBI Solutions; EMGC15) were added to both sides of the sections as the fiducial markers. The dual-axis tilt series ranging from −60° to 60° were acquired using a FEI Tecnai F30 or FEI Tecnai F20 electron microscope (Thermo Fisher Scientific; formerly FEI). An FEI Tecnai F30 electron microscope was equipped with an Axial Gatan US1000 CCD camera and controlled with SerialEM automated acquisition software (Mastronarde, 2005 (link)). An FEI Tecnai F20 electron microscope was equipped with a Gatan US4000 (895) CCD camera and controlled with FEI Xplore 3D TEM tomography software.
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2

Electron Tomography of Cellular Ultrastructure

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250 nm-thick Epon sections were collected on formwar carbon-coated slot grids and analysed using a Tecnai G2 Spirit BioTwin electron microscope (FEI) equipped with an automated tomography stage. The single tilt series of images were acquired in a range of - 65° to + 65° (at 1° intervals) using Xplore 3D - TEM Tomography software (FEI) at 40,000X magnification unless otherwise stated. Tilt series were used with the open source IMOD software to generate tomograms. At least 10 tomograms were analysed per experimental condition. For 3D reconstruction, the surfaces of DMVs and surrounding ER membranes were rendered using the IMOD software.
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