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5 fam labeled single stranded dna ssdna oligonucleotides

Manufactured by Integrated DNA Technologies
Sourced in United States

5'-FAM labeled single-stranded DNA (ssDNA) oligonucleotides are synthetic DNA fragments with a fluorescein (FAM) dye attached to the 5' end. These oligonucleotides are designed for use in various molecular biology applications that require fluorescent labeling of DNA.

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2 protocols using 5 fam labeled single stranded dna ssdna oligonucleotides

1

Gel Shift Assay for DNA-Protein Interactions

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The gel shift assay was adapted from [5 (link)]. 5’-FAM labeled single-stranded DNA (ssDNA) oligonucleotides were purchased from Integrated DNA Technologies. Oligonucleotides (10μM) were folded in folding buffer (20mM Tris pH 7.5, 100mM KCl, 1mM EDTA) by heating at 95°C for 5 min, then allowed to cool passively to room temperature. Folded DNA (0.6 μM) was mixed with recombinant NME2 protein in reaction buffer (50mM Tris pH 8.0, 100mM KCl, 1mM TCEP, 50μg/ml BSA) at room temperature for 30 min, followed by electrophoresis on 5% native polyacrylamide TBE gel in 0.5×TBE at 70V for 1hour and analyzed using Typhoon FLA7000 scanner (GE Healthcare). For sequences of oligonucleotides used, see Supplementary Figure 3.
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2

Gel Shift Assay of NME2 Binding

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The gel shift assay was adapted from 5. 5′‐FAM‐labeled single‐stranded DNA (ssDNA) oligonucleotides were purchased from Integrated DNA Technologies (Coralville, IA, USA). Oligonucleotides (10 μm) were folded in folding buffer (20 mm Tris pH 7.5, 100 mm KCl, 1 mm EDTA) by heating at 95 °C for 5 min, then allowed to cool passively to room temperature. Folded DNA (0.6 μm) was mixed with recombinant NME2 protein in reaction buffer (50 mm Tris pH 8.0, 100 mm KCl, 1 mm TCEP, 50 μg·mL−1 BSA) at room temperature for 30 min, followed by electrophoresis on 5% native polyacrylamide TBE gel in 0.5× TBE at 70 V for 1 h and analyzed using Typhoon FLA7000 scanner (GE Healthcare). For sequences of oligonucleotides used, see Fig. S3.
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