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Rapid hybridization buffer

Manufactured by Cytiva

Rapid hybridization buffer is a buffer solution designed to facilitate efficient and rapid hybridization of nucleic acid probes during molecular biology techniques. It is optimized to provide the necessary ionic conditions and environment for effective hybridization, enabling faster and more reliable results.

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3 protocols using rapid hybridization buffer

1

Northern Blot Analysis of Nrf2 mRNA

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Total RNA was loaded onto agarose gels, separated by electrophoresis, and transferred to Gene Screen Plus membranes. Membranes were prehybridized in rapid hybridization buffer (Amersham, Arlington Heights, IL) and then incubated overnight at 68°C in hybridization buffer containing [32P]DNA probes (1 × 108 cpm) for Nrf2 or 18S mRNA [24 (link),25 (link),35 (link)]. Following hybridization and high stringency washing, membranes were exposed to X-ray film, and mRNA expression quantified by densitometry and normalized with respect to 18 S rRNA.
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2

Northern blot analysis of HO-1 expression

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Total RNA was isolated from endothelial cells with Trizol, loaded onto 1.2% agarose gels and fractionated by electrophoresis. RNA was blot transferred to Gene Screen Plus membranes and prehybridized at 68 °C for 4 h in rapid hybridization buffer (Amersham, Arlington Heights, IL). Membranes were then incubated overnight at 68 °C in hybridization buffer containing [32P]DNA probes (1 × 108 cpm) for HO-1 or 18S mRNA [31 (link),22 (link)]. DNA probes were generated by RT-PCR and labeled with α-[32P]dCTP using a random primer kit (Amersham, Arlington Heights, IL) as previously described [31 (link),35 (link)]. Following hybridization, membranes were washed, exposed to X-ray film at −70 °C, and mRNA expression quantified by densitometry and normalized with respect to 18S rRNA.
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3

RNA Extraction and Northern Blot Analysis

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Rice leaves (1 g) were ground to a fine powder in liquid nitrogen and immersed in 5 mL extraction buffer (50 mM Tris-HCl pH 8, 300 mM NaCl, 5 mM EDTA (ethylenediaminetetraacetic acid), 2% (w/v) SDS (sodium dodecyl sulfate), 10 mM β-mercaptoethanol and 1 mM aurin tricarboxylic acid). Total RNA was precipitated by LiCl [51 (link)]. Afterward, total RNA (40 µg) samples were separated by 1% agarose/formaldehyde gel electrophoresis and then blotted onto Hybond-N+ nylon membranes (Amersham/GE Healthcare, Chicago, IL, USA). Northern hybridization was carried out in a rapid hybridization buffer (Amersham). Membranes were washed under high stringency washing conditions in 0.1× SSC (standard saline citrate) and 0.1% SDS at 65 °C. A 251 bp OsY37 fragment from the pGEM200 vector was radiolabeled with [α-32P]-dCTP (50 µCi) and used as a probe. Alternatively, for RT-PCR analysis, RNA was extracted from 100mg of green or senescing leaves using RNeasy Plant Mini Kit (QIAGEN, Hilden, Germany), then quantified fluorometrically using Qubit RNA BR Assay Kit (ThermoFisher Scientific, Waltham, MA, USA).
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