The largest database of trusted experimental protocols

Ds ri2

Manufactured by Nikon
Sourced in Japan, United States, Germany, China, Netherlands

The Nikon DS-Ri2 is a high-performance digital camera designed for microscopy applications. It features a 16.25-megapixel CMOS sensor and can capture images with a maximum resolution of 4912 x 3264 pixels. The camera supports a wide range of imaging modes, including brightfield, darkfield, and fluorescence, and is compatible with a variety of Nikon microscopes.

Automatically generated - may contain errors

421 protocols using ds ri2

1

Fungal Culture Characterization Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cultures were incubated on oatmeal agar (OA, which favours synnema development), malt extract agar (MEA) and dichloran 18 % glycerol agar (DG18) plates (recipes from Samson et al. 2010 ) at 25 °C in the dark. After 14 d, growth rates were measured and colony characters noted. Colony colours were rated following the charts of Rayner (1970) . Dried herbarium material was rehydrated in sterile water, which was then replaced by Shear's mounting media for photomicroscopy (Crous et al. 2009 ). Measurements and descriptions of microscopic structures were made from cultures grown on synthetic nutrient agar (SNA, Samson et al. 2010 ) at 25 °C in the dark for 14 d, mounted in 85 % lactic acid. Macroscopic photographs were made with a Nikon SMZ25 stereo microscope equipped with a Nikon DS-Ri2 high-definition colour camera head. Photomicrographs of diagnostic structures were made with a Zeiss Axio Imager A2 microscope equipped with a Nikon DS-Ri2 high-definition colour camera head, using differential interference contrast (DIC) optics and the Nikon software NIS-elements D v. 4.50.
+ Open protocol
+ Expand
2

Tanai Village Amber Fossil Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The amber specimens investigated in this paper are from Tanai Village in the Hukawng Valley, Myitkyina District of Kachin State, Myanmar. The amber-bearing deposits have been dated to the earliest Cenomanian, ca 98.8 ± 0.6 Ma, based on U–Pb radiometric dating of zircons from the volcaniclastic matrix [24 (link)]. All specimens are housed at the fossil collection of the Key Laboratory of Insect Evolution and Environmental Changes, at the College of Life Sciences, Capital Normal University, (CNUB; Dong Ren, curator), in Beijing, China.
Preparation and imaging methods follow Selden & Penney [25 (link)]. The photographs were taken with a Nikon SMZ 25 and an attached Nikon DS-Ri 2 digital camera system, as well as a Nikon ECLIPSE Ni and an attached Nikon DS-Ri 2 digital camera system. Micro-CT scanning of CNU009432 was carried out with a Micro-CT (MicroXCT-400, ZEISS), located at the Institute of Zoology, Chinese Academy of Sciences. The three-dimensional structure of CNU-ARA-MA2016101 and the egg sac was reconstructed using Avizo software. The line drawings were prepared with Adobe Illustrator CC and Adobe Photoshop CC, the images were processed by Adobe Photoshop CC.
+ Open protocol
+ Expand
3

Quantifying Amyloid-beta Levels in Muscle

Check if the same lab product or an alternative is used in the 5 most similar protocols
To determine whether CTS specifically reduces the levels of Aβ in muscle cells, this test was performed [60 (link)]. CL2179 was maintained and treated in the same way as the paralysis assay. At the 36th hour after raising the temperature to 25 °C, the nematodes were collected, and the OP50 was washed off with M9 buffer. The nematodes were transferred to a glass side, and a drop of sodium azide was added (20 mM), then it was covered with a coverslip. The fluorescence intensity was obtained under the fluorescence microscope (DS-Ri2; Nikon, Tokyo, Japan).
Respectively, after synchronization, AM141, TJ375, CF1553, and CL2166 were inoculated onto NGM with or without CTS for 72 h at 20 °C. The nematodes were collected with M9 buffer and washed off OP50. After dropping on a slide with sodium azide, the number of Q40::YFP fluorescent spots in AM141 nematodes was observed and counted with a fluorescence microscope (DS-Ri2; Nikon, Tokyo, Japan), and the corresponding fluorescence intensity was measured in all other strains. Each group took at least 30 images and repeated the experiment three times independently.
+ Open protocol
+ Expand
4

Microscopy Techniques for Small Insect Specimens

Check if the same lab product or an alternative is used in the 5 most similar protocols
We have tried to use Confocal Laser Scanning Microscopy and MicroXCT even SRμCT to observe more morphological characters, but with no success. It might be caused by the fact that these insects are too small and nearly semitransparent. Photographs were taken by using a Nikon SMZ 25 microscope with a Nikon DS-Ri 2 digital camera system, and the enlarged images of details of the specimens were taken using a Nikon ECLIPSE Ni microscope with a Nikon DS-Ri 2 digital camera system. Photographs with green background were taken using green epifluorescence as the light source attached to Leica DM5500B with an ANDOR Zyla digital camera system (Fig. 3d). Line drawings were prepared by using Adobe Illustrator CC and Adobe Photoshop CC graphics software.
+ Open protocol
+ Expand
5

Comprehensive Wing Venation Analysis Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
The material described here is housed in the Key Lab of Insect Evolution and Environmental Changes, College of Life Sciences, Capital Normal University, Beijing, China (CNUB; Dong Ren, Curator). The specimen CNU-PHA-NN2019006 was examined under a Leica M205C dissecting microscope. All photographs were taken with a Nikon SMZ 25 microscope with an attached Nikon DS-Ri2 digital camera system and a Nikon ECLIPSE Ni microscope with an attached Nikon DS-Ri2 digital camera system. Line drawings were prepared using Adobe Illustrator CC and Adobe Photoshop CC graphics software.
The wing-venation nomenclature follows Wang et al. (2014) [44 (link)]. The following abbreviations have been used throughout: 1A, the first anal vein; Cu, cubitus; CuA, cubital anterior; CuP, cubital posterior; CuPa, anterior branch of CuP; CuPaα, anterior branch of CuPa; CuPaβ, posterior branch of CuPa; CuPb, posterior branch of CuP; M, media; MA, medial anterior; MP, medial posterior; R, radius; RA, radial anterior; RP, radial posterior; ScA, subcostal anterior; ScP, subcostal posterior.
+ Open protocol
+ Expand
6

Xylem Transport Visualization in Fruit Development

Check if the same lab product or an alternative is used in the 5 most similar protocols
Whole fruit and pericarp surfaces were examined using a binocular dissection scope (Nikon, SMZ 1270) and imaged with an attached camera (NIKON, DS-Ri2). Samples were stained with the water-soluble Safranin-O dye (Sigma-Aldrich) to examine xylem transport towards the fruit. Six strands were sampled at each time point along the course of fruit development. Three of the strands were placed for 4 h in 5 ml 1% Safranin-O solution and three were placed in 5 ml deionized water as a control. To monitor Safranin-O transport along the xylem and into the fruit pericarp tissue, a longitudinal section of the fruit (through the attached strand segment and at the center of the calyx to the distal end, the stigma trace) and a cross-section (at the middle between the calyx and the distal end) were generated and photographed using zoom stereomicroscope (SMZ1270, Nikon) equipped with a camera (DS-Ri2, Nikon). Fresh lemon juice was applied to avoid oxidation and pericarp browning as a result of the cut.
+ Open protocol
+ Expand
7

Cell Growth on Planar PC(PEW-C12E5)-Gel

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cell growth on the surface of the planer-shaped PC(PEW-C12E5)-gel was observed. The planar-shaped PC(PEW-C12E5)-gel (20 × 15 × 1 mm) was washed as described above using a 40/60 ethanol/PBS ratio. The washed gel was placed in a 3.5 cm Petri dish. Three milliliters of NCI-H460 cells suspended in RPMI 1640 and 10% FBS medium 2 × 105 cells mL−1 density was seeded in the dish and cultured in a CO2 incubator at 37 °C with 5% CO2 for 96 h. The culture medium was replaced with fresh medium at the time of 48 h. The same experiment was performed without the gels, and cells were cultured on a tissue culture-treated culture dish (Corning Inc., #430165). Cells were observed at 48 and 96 h using a microscope (Eclipse Ti2-U, Nikon, Japan, CCD camera DS-Ri2, Nikon, Japan). 96 h-cultivation cells were stained with -Cellstain- Double Staining Kit (Dojindo, Inc., Kumamoto, Japan), and the living cells were observed using a fluorescent microscope (Eclipse Ti2-U, Nikon, Japan, CCD camera DS-Ri2, Nikon, Japan).
+ Open protocol
+ Expand
8

Immunohistochemical Detection of TRPML-1

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunohistochemistry, after re-hydration, tissue sections were incubated with Tris-HCl 20 mM, EDTA 0.65 mM, Tween-20 0.05% pH 9, in a microwave for 5 min (two times) for antigen retrieval. Sections were treated with H2O2 for 20 min, washed, incubated for 1 h at room temperature with 5% bovine serum albumin (BSA) and 0.3% Triton X-100 in PBS, and then overnight at 4 °C with anti-TRPML-1 Ab. Thereafter, slides were incubated for 30 min at room temperature with a biotinylated secondary Ab, rinsed, and exposed for 30 min to the streptavidin–biotin complex (VECTASTAIN ABC Kit, Vector laboratories, Burlingame, CA, USA). Immunoreactivity was detected by the addition of 3,3′-diaminobenzidine (DAB, Peroxidase Substrate Kit, Vector laboratories, Burlingame, CA, USA). Four random fields of each tissue specimen were analyzed under ×40 magnification using the Leica DMR Microscope collected by TV camera (Nikon DS-Ri2) with an NIS Element Imaging Software (Nikon Instruments, Firenze, Italy).
Untransfected, siGLO, siTRPML-1, pCMV, and pCMV-pTRPML-1 T98 and U251 cells were maintained on 8-well culture slides in fresh medium. After 72 h, cells were fixed with 2% and 4% paraformaldehyde with 0.5% of Triton X-100 in PBS for 10 min at room temperature and were then counterstained with hematoxylin. Immunohistochemistry in these slides was performed as described above, without antigen-retrieval.
+ Open protocol
+ Expand
9

Histological Analysis of Lymph Nodes

Check if the same lab product or an alternative is used in the 5 most similar protocols
For histological analysis, fixed lymph nodes were dehydrated in 100% ethanol and embedded in paraffin (Leica) using a Leica EG1150 tissue embedder. 7-μm-thick sections using a HM340E Thermo Scientific microtome were processed for hematoxylin-eosin (HE) (Leica) and immunohistochemistry staining as described (41 (link)). For immunohistochemistry of histology slides the following antibodies were used: anti-TER-119 (R&D Systems, MAB1125) and Alexa Fluor 488 conjugated goat anti-rat IgG antibody (Life Technologies A11006). Stained slides were mounted with Vectashield DAPI Mounting Medium (Vector Laboratories, H-1200). Tissue section samples were imaged using a Nikon Ni-U upright microscope (Nikon Instruments) using a 40x dry objective connected to a Nikon DS-Ri2 camera.
+ Open protocol
+ Expand
10

Imaging Protocols for Visualizing Gene Expression

Check if the same lab product or an alternative is used in the 5 most similar protocols
In situ hybridization images were taken on either a Zeiss AxioScop 2 mounted with an Axiocam camera triggered by Axiovision software (Carl Zeiss), a Zeiss Axio Imager A2 mounted with a Canon 6D triggered by Canon professional software, or a Nikon NTi using a Nikon DS-Ri2 color camera and the Elements software (Nikon). All expression patterns described here have been submitted to Kahi Kai, a comparative invertebrate gene expression database [62 (link)] hosted at http://www.kahikai.org/index.php?content=genes. Scoring of treatment phenotypes was performed on either a Zeiss Z-1 Axio imager or a Zeiss Axio Imager A2 microscope and confocal imaging was conducted on either a Zeiss LSM710 or Zeiss LSM Exciter microscope running the LSM ZEN software (Carl Zeiss). Fluorescent images were false-colored. The fluorescent channels were merged using ImageJ (http://rsbweb.nih.gov/ij/) and cropped to final size in Photoshop Cs6 (Adobe Inc.). Confocal images for Fig. 5 were processed using Imaris 8.1 (Bitplane).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!