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247 protocols using hla dr

1

Multi-color Flow Cytometry Panel for Myeloid Cell Analysis

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For neutrophil and monocyte isolation purity analysis: (from BioLegend unless otherwise stated) CD3 (FITC, HIT3a); CD19 (FITC, HIB19); CD20 (FITC, 2H7); CD56 (FITC, MEM-188); CD66b (AF700, G10F5); HLA-DR (V500, G46-6, BD Biosciences); CD14 (PE, M5E2); CD16 (APC-Cy7, 3G8).
For isolation of mononuclear subsets by FACS: (from BioLegend unless otherwise stated) CD1c (PE-Cy7, L161); CD3 (FITC, HIT3a); CD11c (V450, B-ly6, BD Biosciences); CD14 (PE, M5E2); CD16 (APC-Cy7, 3G8); CD19 (FITC, HIB19); CD20 (FITC, 2H7); CD56 (FITC, MEM-188); CD66b (AF700, G10F5); CD123 (PerCP-Cy5.5, 7G3); HLA-DR (V500, G46-6 BD Biosciences).
For MoDC differentiation analysis: CD1a (BV510, BD Biosciences); CD1c (BV421, BD Biosciences); CD11c (PE-Cy7, BioLegend); CD14 (BV711, BioLegend); CD16 (PE, BD Biosciences); CD64 (FITC, BD Biosciences); CD141 (APC, Miltenyi Biotec).
For macrophage differentiation analysis: CD80 (APC, clone 2D10); APC isotype control; CD200 receptor (PE, clone OX-108); PE isotype control; CD1a (FITC) FITC isotype control (All from BioLegend).
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2

Phenotypic Characterization of Plasmacytoid Dendritic Cells

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To evaluate the percentage of pDCs, PBMCs (3 • 10 5 ) were stained with the Lineage cocktail 1 (BD Pharmingen) containing Abs that, in combination, stain lymphocytes, monocytes, eosinophils, and neutrophils. In the Lineage negative fraction of a lympho-mono gate, we considered as pDCs the cells triple positive for IL3Ra (CD123), HLA-DR (BD Pharmingen), and BDCA2 (Miltenyi Biotec). The full gating strategy is shown in Supplementary Fig. S1 (Supplementary Data are available online at www.liebertpub .com/jir).
The expression on the pDC surface of CD86 (BD Pharmingen) or inducible T cell co-stimulator ligand (ICOS-L), B7-H1, Ig-like transcript 7 (ILT7), Fce-RIg (CD23) and Fcg-RIIa (CD32) (eBioscience) was evaluated in the Lin -CD123 + HLA-DR + BDCA2 + gate by running cells on a FACSCanto (BD Pharmingen) and analyzing data by FlowJo software (TreeStar, Inc.) .
Monoclonal Abs and IgG1, IgG2a control Abs (BD Pharmingen) were used conjugated with FITC, PE, PERcP, APC, or APC-Cy7 as needed.
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3

Isolation and Analysis of MDSCs

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Peripheral blood of patients with breast cancer was collected in tubes with ethylenediaminetetraacetic acid anticoagulant and transported at 4°C. Peripheral blood mononuclear cells (PBMCs) were isolated from blood with the Ficoll-Paque plus (Amersham Biosciences, Piscataway, USA) density gradient centrifugation. PBMCs were stained with CD33 (BioLegend Inc., San Diego, USA), HLA-DR (BD Biosciences, Franklin Lakes, USA), CD14 (BioLegend Inc.), and CD15 (BD Biosciences) for 2 hours. Then, MDSCs stained with CD33 and HLA-DR were sorted on a FACS Aria cell sorter (BD, San Diego, USA). Finally, different subsets of MDSCs were analyzed through flow cytometry. This process yielded a cell-type suspension with purity > 95%.
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Immunophenotypic Profiling of CEM-C7 Cells

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For the detection of the immunophenotype of the CEM-C7/HDR and CEM-C7–14 cells, we used antibodies against the following targets: CD33, CD34, HLA-DR, cyTdT, cCD3, CD3, CD4, CD5, CD7, CD8, CD117, CD1α, CD2, CD10, CD19, CD20, CD13 and CD45 (Becton Dickinson Inc., Franklin Lakes, NJ, USA). Positivity for the antigens was determined using a FACSCalibur flow cytometer (Becton Dickinson Inc.).
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5

Lymphocyte Subset Analysis by Flow Cytometry

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Lymphocyte subset analyses were performed real-time using standard flow cytometric clones and techniques in laboratories that were certified by the NIAID Immunology Quality Assurance Program as previously reported15 (link). Women were evaluated for expression of activation of CD4+ and CD8+ T cells in either fresh whole blood collected in EDTA tubes using three-color flow cytometry or frozen PBMCs using three or four-color flow cytometry as reported elsewhere16 (link)–18 (link). The following fluorochrome-conjugated antibodies were used: anti- CD3, -CD4, -CD8, -HLA-DR, and -CD38 (Becton Dickinson Immunophenotyping Kit II; San Jose, CA). Flow cytometric analysis was performed using a FACSCalibur flow cytometer utilizing CELLQuest software (Becton Dickinson; San Jose, CA).
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6

Flow Cytometry Analysis of ADSCs

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Cell surface marker analysis was performed by flow cytometry (Miltenyi Biotec) to confirm the stem cell characteristics of ADSCs. The cell surface markers used were CD73 allophycocyanin (APC), CD90 fluorescein isothiocyanate (FITC), and CD105 peridinin-chlorophyll-protein (PerCP) Cy5.5 as positive MSCs markers, and lineage negative marker-PE including CD34, CD45, CD11b, CD19, and human leukocyte antigen (HLA)-DR (Becton Dickinson) as positive haematopoietic cells markers. The cells (1 × 105, passage 3) were stained with fluorescence-labelled probes specific to cell surface molecule. Data were obtained from 10,000 events per analysis.
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7

Multiparametric Analysis of MSCs and CMCs

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The antibodies for surface marker analysis for MSCs or isolation of CD146+MSCs are PEcy7-conjugated anti-Sca-1, CD105, CD90, CD45, CD34, HLA-DR and FITC-conjugated anti-CD146 (Becton-Dickinson Biosciences, Shanghai, China). For isolation of CMCs, PE-conjugated anti-Troponin T (cTnT; Becton-Dickinson Biosciences) was used in flow cytometry. Assessment of apoptosis was labeled with a Dead Cell Apoptosis Kit with Annexin V FITC and propidium iodide (PI) (Invitrogen; V13242), and analyzed by flow cytometry. Both pro-apoptotic cells and apoptotic cells were counted. Assessment of proliferation was done with a BrdU Staining Kit for Flow Cytometry (Thermo Fisher Scientific, Inc., Waltham, MA, USA; 8811-6600-42). Reactive oxygen species (ROS) levels were measured in live cells with a dichlorodihydrofluorescein diacetate (DCFH-DA) method that converts 2’,7’-dichlorofluorescin diacetate (DCFDA) to oxidized 2’, 7’ -dichlorofluorescein (DCF), which is detected by by flow cytometry. Flow cytometry data were analyzed and presented with FlowJo software (Flowjo LLC, Ashland, OR, USA).
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8

Immunophenotyping of Mesenchymal Stem Cells

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Undifferentiated MSCs were subjected to flow cytometry analysis to confirm that the hBM-, hAT-, and hWJ-MSCs maintained their immunophenotypic characteristics after growth in the culture. After the 3rd passage, stem cells were harvested and re-suspended in their own culture medium at a concentration of 1x106 cells/mL. Flow cytometry was performed using a FACSCalibur flow cytometer (Becton Dickinson, San Jose, CA, USA). The data were analyzed using CellQuest software (Becton Dickinson, San Jose, CA, USA). Debris and dead cells were gated out by forward- and side-scatter profiles. Immunophenotyping of the MSCs was performed with antibodies against the following human antigens: CD3, CD4, CD5, CD7, CD8, CD10, CD11b, CD13, CD14, CD15, CD19, CD29, CD33, CD44, CD45, CD71, CD73, CD90, CD106, CD123, CD146, CD166, HLA-DR, HLA-A, HLA-B, HLA-C, and HLA-G (Becton Dickinson, San Jose, CA, USA).
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9

Immunophenotypic Characterization of MSCs

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MSCs were obtained from mucosa of a 40-year old healthy male donor. Cells were cultured in low glucose DMEM (StemCell, USA) supplemented with L-glutamin, penicillin/streptomycin and 20% fetal bovine serum (StemCell, USA) at a concentration of 0.3 × 106 per flask with filter ventilated caps (25 cm2) in a humidified atmosphere of 5% CO2 and 37°C. MSCs were subcultured every 7 days up to passage 22.
For immunophenotypic characterization, cells were stained with the panels of antibodies against the following surface markers: CD3, CD13, CD14, CD19, CD25, CD29, CD31, CD34, CD38, CD44, CD45, CD69, CD73, CD90, CD105, CD106, CD166 and HLA-DR (Becton Dickinson, USA). The expression of the surface markers was then analyzed using a BD FACS Canto II (Becton Dickinson Bioscience, USA) flow cytometer. The resulting expression profiles revealed high expression levels (>60% positive cells) for CD90, CD105, CD166, CD44, CD73, medium levels (30-60%) for CD13, CD29 and CD69, and very low levels (<5%) for CD45, CD34, CD133, CD3, CD19, CD25, CD38, CD45, CD106, CD31 markers. This immunophenotype was consistent with the reported immunophenotype for MSCs [47 (link)] and did not change in the course of the experiment.
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10

Phenotypic Analysis of CAR-T Cells

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For phenotypic analysis we used CD11c, CD80, CD83, HLA-DR, CD45, CD56, CD19, CD8, CD4, and CD3 mAbs (all from Becton Dickinson, San Jose, CA) conjugated with FITC, PE, PerCP or APC fluorochromes. The expression of CAR-GD2 was detected using the 1A7 Ab. Samples were analyzed with a BD FACScalibur system equipped with the filter set for quadruple fluorescence signals and the CellQuest software (BD Biosciences). For each sample, we analyzed a minimum of 30,000 events. CTLs were also analyzed for binding of specific tetramers. Tetramers were prepared by the Baylor College of Medicine core facility. For each sample, a minimum of 100,000 cells were analyzed.
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