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567 protocols using skyscan 1176

1

Micro-CT Analysis of Bone Parameters

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Following fixing in paraformaldehyde (40 g/l) solution for 1 day, the skulls from each group, with UHMWPE particles removed, were scanned by micro-CT (Skyscan1176; Bruker microCT, Kontich, Belgium). The parameters were set as follows: Resolution 18 µm, current 100 mA, voltage 80 kV, and exposure time 100 ms. Bone mineral density (BMD) and the bone volume/tissue volume ratio (BV/TV) were analyzed by software measurement (Skyscan1176; Skyscan CT analyser v1.115.2.2+; Bruker microCT). Bone resorption pits and porosity were quantified using Image J software (version 1.36; NIH, Bethesda, MA, USA).
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Micro-CT Analysis of Proximal Tibia

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The right tibias of all groups were scanned using Micro-computed tomography (CT) (SkyScan 1176, Bruker-microCT, Kontich, Belgium). The collected right proximal tibias (cleaned of adherent soft tissues) were placed on the scanning bed. The bone micro architectural properties of the proximal tibias were determined with Micro-computed tomography (SkyScan 1176, Bruker, Germany), using an isotropic voxel size of 9 μm, and a set of scanning parameters consisted of 55 kV, 400 μA, 200 ms exposure time.
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3

In Vivo Adipose Tissue Quantification

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Mice were weighed at the time of sacrifice. The body fat content was measured in vivo at 39 weeks of age using microcomputed tomography (microCT, SkyScan 1176, Bruker) with a 35 μm isotropic voxel resolution (357 μA, 500 ms integration time, 1 frame averaging). A 1 mm aluminum filter was used to reduce the effects of beam hardening. Images were reconstructed using NRecon software (with 30% beam hardening and 20 ring artifact correction). For in vivo scans, mice were anesthetized by 2–3% isoflurane inhalation. Scans were reconstructed for the abdominal region (between the proximal end of L1 and the distal end of L6, as previously published13 ) to quantify representative AT content in each animal. Adipose tissue percentage was measured using a modified script provided by CTan software (SkyScan 1176, Bruker) which delineated AT threshold from the other tissues as previously published.14 (link) Briefly, the algorithm separated the mouse body from the background to provide the total tissue volume (TV), while AT threshold delineated total fat mass from lean mass and bone, forming AT percentage values for each scanned mouse.
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Bone Microstructure Analysis in Mice

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Mouse hind limbs and skulls were harvested, soft tissues were removed, and the remaining tissues were stored in 70% ethanol. The femurs of 4-week-old OsxCre;Stat3fl/fl mice and control littermates were scanned with a SkyScan1176 (Bruker, Kartuizersweg, Belgium) at a 8.96 μm resolution for quantitative analysis. The turn on voltage was 65 kV and current density was 300 μA. The region from −40 to −240 slices below the growth plate was analyzed for BV/TV, Tb.Th., Tb.N., and Tb.Sp. The region from −400 to −456 slices below the growth plate was analyzed for Ct.Th. Skulls of 4-week-old OsxCre;Stat3fl/fl mice and control littermates were used for Micro-CT analysis (SkyScan 1176, Bruker, Kartuizersweg, Belgium) with 9 μm voxel size. The turn on voltage was 60 kV and current density was 280 μA Micro-CT analysis of the femurs of 6-week-old Col1cre ERT2;Stat3fl/fl and 9-week-old mice that had been injected with AG490 for 5 weeks, 5-week-old tail-suspended mice injected with colivelin or PBS and their corresponding WT littermates were scanned with a Quantum GX2 (PerkinElmer, Waltham, USA) instrument. The turn on voltage was 80 kV and current density was 88 μA, and 101 slices (9 μm each) immediately below the growth plate in the distal metaphysis of the femur were used for quantification of the bone parameters.
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Measuring Adipose Tissue Content in Mice

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Mice were weighed bi-weekly. The body fat content was measured at 26 weeks of age using the microCT scanner (microCT, SkyScan 1176, Bruker) with a 35 μm isotropic voxel resolution (357 μA, 500 ms integration time, 1 frame averaging). A 1 mm aluminum filter was used to reduce the effects of beam hardening. Images were reconstructed using NRecon software (with 30% beam hardening and 20 ring artifact correction). For in vivo scans, mice were anesthetized by 2–3% isoflurane inhalation. Scans were reconstructed for the abdominal region (between the proximal end of L1 and the distal end of L6, as shown in Supplement Figure 1 (Fig. S1) to quantify representative AT content in each animal. Adipose tissue percentage was measured using a modified script provided by CTan software (SkyScan 1176, Bruker) which delineated AT threshold from the other tissues as previously published (15 ). Briefly, the algorithm separated the mouse body from the background to provide the total tissue volume (TV), while AT threshold delineated total fat mass from lean mass and bone (Supplement Fig. S1), forming AT percentage values for each scanned mouse.
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6

Visualizing Brain Barrier Permeability and Acetate Uptake

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BBB permeability assay: after being anesthetized by intraperitoneal injection of urethane (1.8 g/kg), rats were intravenously injected with Cy5-Dextran (10 kDa, Stargraydye, China). One hour later, after transcardial perfusion with 300 ml of PBS, the whole brain tissue was removed for observation under a 646 nm excitation wavelength exposed by a small animal live imaging system (SkyScan 1176, Bruker, Belgium) and photographed.
Detection of supplemental acetate in the brain: after being anesthetized by intraperitoneal injection of urethane (1.8 g/kg), rats were given an intravenous injection of Sulfo-Cyanine5-labelled acetate (Cy5-acetate, provided by Xi’an Rui Xi Biotechnology Co., Ltd., China). Thirty minutes later, the rats were transcardially perfused with 300 ml of PBS to flush out the Cy5-acetate from the blood vessels. Then the rats were exposed to a 646 nm excitation wavelength using a small animal live imaging system (SkyScan 1176, Bruker) and photographed.
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7

Micro-CT Analysis of Tibial Subchondral Bone

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Harvested knee joints were dissected free of soft tissue, fixed overnight in 70% ethanol at 4°C and analyzed by micro-CT (SkyScan 1176; Bruker micro-CT) at a resolution of 9 µm/pixel. The micro-CT scans were acquired over an exposure time of 900 ms, a voltage of 50 kV and a current of 500 µA. Images were reconstructed by NRecon version 1.1.11 (Bruker micro-CT) and analyzed by CTAn, v1.15 (SkyScan1176 in vivo micro-CT; Bruker). A sagittal view of the entire medial compartment of the tibial subchondral bone was used for 3D histomorphometric analysis, with bone volume/tissue volume (BV/TV, %), trabecular separation (Tb.Sp), and BMD extracted for performing comparisons.
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8

Micro-CT Analysis of Tibial Fracture Callus

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After removing the intramedullary pin, whole right tibias with callus were dissected from the attached muscle and stored in 10% neutral formalin for 48 h. Samples of 28 d post fracture were scanned using a high-resolution micro-CT (SkyScan1176 Software: Version1.1 (build 6), Bruker, Kontich, Belgium) [17 (link)]. The region of interest of each callus was the area 2 mm above and below the fracture line [18 (link)]. To better describe our findings, we used the coronal plane through the intramedullary pin to divide the callus into anterior and posterior parts (Fig. 3) and calculated architectural parameters in the anterior site, posterior site, and total callus respectively, as previously described [16 (link)].

Position of anterior and posterior callus. a Cross plane. b Sagittal plane

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9

Subchondral Bone Microarchitecture Analysis

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To investigate alterations in the subchondral bone micro‐architecture, the left knees were imaged using micro‐computed tomography (micro‐CT) (SkyScan1176 Software: Version 1.1, build 6, Bruker, Kontich, Belgium), with a resolution of 9 μm per voxel. Data were collected at 50 KeV of energy, with a 270‐μA current and 8.96580‐μm cubic resolution. For the bone histomorphometry analysis, the ROI was defined as the trabecular bone of the tibia subchondral bone at the cross‐sectional level, excluding the cortical shell6, 25. The bone mineral density (BMD), bone volume ratio (BV/TV), trabecular bone pattern factor (Tb.Pf), and Structure Model Index (SMI) were calculated to describe the bone mass and structure.
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10

In vivo micro-CT analysis of tibial bone

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The right proximal tibia was repeatedly imaged (in the control and at 17 and 28 days) using in vivo micro-CT (SkyScan 1176, Bruker, Kontich, Belgium) with a voxel size of 17.5 μm. The imaging was conducted under ketamine-xylazine anesthesia, following previously established protocols (average anesthesia duration: 30–40 min, scan duration: 7–10 min). Bone structural changes were assessed using CT Analyser® software (CT Analyzer 5.30 Software, OMICRON, Vienna, Austria), employing regions of interest (ROIs) of identical sizes around the tibia. ROIs of standard dimensions were delineated around the respective regions to calculate bone volume.
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