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43 protocols using hla dr percp

1

Characterization of Monocyte Subsets by Flow Cytometry

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To characterize monocyte subsets, freshly purified PBMCs were analyzed by six-color flow cytometry on FACS LSRII apparatus. The gating strategy was based on a previous report [15 (link)]. Monocytes were subdivided into three major subsets: classical CD14++CD16, intermediate CD14++CD16+ and non-classical CD14+CD16++ monocytes. The following anti-human mAbs were used: CD45-Amcyan (BD Biosciences), HLA-DR-PerCP (BD Biosciences), CD19-ECD (Beckman Coulter), CD14-QDot655 (Invitrogen), CD16-APC-H7 (Beckman Coulter, Villepinte, France). The Live/Dead blue Dye (Invitrogen) was used to exclude dead cells.
Samples of the purified monocytes used to generate MD-DCs and of the resulting MD-DCs were routinely stained with the following anti-human mAbs: CD14-FITC, CD11c-APC, CD40-PE, HLA-I-FITC, HLA-DR-PerCP, CD80-PE, CD83-APC and CD86-FITC (all from BD Bioscience) and analyzed by flow cytometry on FACS canto II apparatus (BD Biosciences).
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2

Flow Cytometry Analysis of MSCs

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Flow cytometry analyses were performed on passages P1, P5, and P11 with the following fluorescently labeled monoclonal antibodies: FITC-CD73, FITC-CD90, FITC-CD105, PE-CD45, PE-CD34, and PercP-HLA-DR (BD), according to the method described by Maumus et al. (28 (link)). Cells were incubated with monoclonal antibodies for 15 min at room temperature (22±2°C) in the dark and then washed with PBS before fixation with 1% formaldehyde (Sigma-Aldrich). After incubation, cell viability was analyzed using a three-color flow cytometer (FACS Calibur, Becton Dickinson, USA); 10,000 events were analyzed for each sample. For data acquisition and analysis, the Cell Quest and Paint-a-Gate softwares (Becton Dickinson Pharmigen) were used
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3

Isolation and Characterization of Myeloid Dendritic Cells

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Bone marrow samples from patients with SAA and HCs were collected in heparin anticoagulant tubes. Bone marrow mononuclear cells were isolated by density gradient centrifugation using Ficoll‐Paque Plus solution (Amersham Biosciences, Uppsala, Sweden) according to the manufacturer's instructions. Thereafter, we placed the cells in a culture medium containing 79% RPMI 1640 (Gibco‐BRL, Grand Island, NY, USA), 20% foetal bovine serum (Gibco‐BRL), and 1% penicillin–streptomycin (Hyclone, South Logan, UT, USA) at a cell concentration of 1.5 × 106/mL. After incubation for 2 h, the suspended cells were discarded, and the remaining semi‐adherent cells were cultured in a medium containing 100 ng/mL recombinant human granulocyte monocyte colony stimulating factor (rhGM‐CSF) (North China Pharmaceutical Co., Hebei, China) and 25 ng/mL recombinant human (rhIL‐4) (PeproTech, Rocky Hill, NJ, USA) at 37°C with 5% CO2. The medium was changed, and the above‐mentioned cytokines were added every 2 days. On Day 6, 1000 U/mL rhTNF‐α (PeproTech) was added to induce mDC maturation. On Day 7, the suspended cells were collected, labelled with APC‐CD11c (BD Pharmingen) and PerCP‐HLA‐DR (BD Pharmingen), and sorted using a FACSAria flow cytometer (BD Biosciences, San Jose, CA, USA). Purity of the mDCs was measured and quantified as the percentage of CD11c+HLA‐DR+ cells among all sorted cells.
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4

Isolation and Maturation of Myeloid Dendritic Cells from SAA Patients

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Bone marrow samples from all subjects were collected in heparin anticoagulant tubes. Samples from untreated SAA patients were acquired at the time of diagnosis. Their bone marrow mononuclear cells (BMMNCs) were isolated by density gradient centrifugation using Ficoll‐Paque PLUS solution (Amersham Biosciences) and then placed in culture medium (containing 79% RPMI 1640 [GIBCO BRL], 20% fetal bovine serum [GIBCO BRL], and 1% penicillin‐streptomycin [HyClone]) at a cell concentration of 1.5 × 106/ml. After standing for 2 h, the suspended cells were discarded and the remaining semi‐adherent cells were cultured in medium containing 100 ng/ml rhGM‐CSF (North China Pharmaceutical Co.) and 25 ng/ml rhIL‐4 (PeproTech), at 37℃ with 5% CO2. Change the medium and add the above two cytokines every 2 days. On day 6, 1000 U/ml rhTNF‐α (PeproTech) was added to induce mDC maturation. On day 7, the suspended cells were collected, labeled with APC‐CD11c (BD Pharmingen) and PerCP‐HLA‐DR (BD Pharmingen), and sorted using a FACSAria flow cytometer (BD Biosciences). The purity of the mDCs was measured and quantified as the percentage of CD11c+HLA‐DR+ cells in all sorted cells.
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5

Intracellular Cytokine Detection in Blood

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For intracellular cytokine detection, 100ul of peripheral blood from heparin coated tubes was stained against lineage specific markers (CD3, CD19, CD20, CD56) conjugated with FITC, CD16-Alexa Fluor 700, CD11c-APC, CD14-PE-DyLight594 (Exbio), HLA-DR-PerCP (BD Biosciences), CD1c-BV510, CD141-BV421 (BioLegend), and CD123-PE-Cy7 (ThermoFisher Scientific). After RBC were lysed with BD Lysing solution (BD Biosciences), cells were fixed and permeabilized using FixPerm kit (ThermoFisher Scientific). Cytokines were stained using anti IL-6-PE (clone MQ2-13A5) (Biolegend), IL-1β-PE (clone CRM56) – (ThermoFisher Scientific) TNFα-PE (clone MAb11) (Exbio) or CXCL10-PE (clone J034D6), respectively. When indicated, peripheral blood was stimulated with R848 (1ug/ml) for 4 hours and 1 μl/ml Brefeldin A (Biolegend) was added for the last 3 h of the incubation (BD Biosciences). CXCL10 production was detected as described above.
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6

Immunophenotypic Analysis of AT-MSCs

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Unstimulated and IFNγ-stimulated AT-MSC were trypsinized and washed with FACS Flow (BD Biosciences, San Jose, CA). Cell suspensions were incubated with mouse-antihuman monoclonal antibodies against CD13-PE-Cy7; HLA-DR-PERCP; HLA-ABC-APC; CD31-FITC; CD73-PE; PD-L1-PE (all BD Biosciences); CD90-APC and CD105-FITC (R&D Systems, Abingdon, UK) at room temperature in the absence of light for 30 min. After two washes with FACS Flow, flow cytometric analysis was performed using FACSCANTO-II with FACSDIVA Software (BD Biosciences).
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7

Isolation and Characterization of MSCs

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MSCs were isolated from the iliac crest bone marrow of all the study subjects and purified using density gradient centrifugation as previously described [25 (link)]. After being resuspended in Dulbecco's Modified Eagle's Medium (DMEM, Gibco, USA) containing 10% heat-inactivated fetal bovine serum (FBS, Sijiqing, China), MSCs were seeded in 25 cm2 flasks and cultured in an incubator with 5% CO2 at 37°C. To remove the suspended cells, the medium was replaced 48 hours later and every 3 days thereafter. At 80–90% confluence, the adherent cells were recovered using 0.25% Trypsin containing 0.53 mM EDTA (Gibco, USA) and replated in 75 cm2 flasks as passage 1. MSCs were expanded and used at passages 4 for all experiments. Surface markers of MSCs were detected using flow cytometry (FCM), which was performed on BD Influx cell sorter (BD, USA). CD14-APC, CD29-PE, CD44-FITC, CD45-APC, CD105-FITC, and HLA DR-PerCP antibodies were used (all from BD, USA).
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8

Comprehensive Leukocyte Phenotyping Protocol

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Leukocyte phenotyping has been described in a recent publication by our group.20 (link) Peripheral blood mononuclear cells (PBMC) were isolated from human peripheral whole blood by Ficoll-Paque density gradient centrifugation, and the pellet was re-suspended with a dilution of 1×106 cells/mL in Fluorescence-Activated Cell Sorting (FACS) buffer. 100μL suspension was then distributed in 4 tubes:

Tube 1: not stained, containing 100μL of the PBMC suspension.

Tube 2: for CD3 assessment: 100μL of the PBMC suspension, Monoclonal antibodies (3μL CD3 FITC - BD Bioscience 561,806 + 40μL FACS Buffer);

Tube 3: for T and B cell phenotyping; 100μL of the PBMC suspension, Monoclonal antibodies (3μL CD3 FITC + 3μL CD4 PE - BD Bioscience 555,347 + 2μL CD8 PE-Cy7 - BD Bioscience 557,746 + 3μL CD19 PE-Cy5 - BD Bioscience 555,414);

Tube 4: for monocytes (M1, M2) and natural killers (NK) phenotyping: (3μL CD3 FITC + 2μL CD56 PE-Cy7 - BD Bioscience 557,747 + 3μL CD16APC - BD Bioscience 561,248 + 2μL CD14APC-Cy7 - BD Bioscience 561,384 + 3μL HLA-Dr PerCP - BD Bioscience 347,402).

Incubation for staining was carried out at 4°C for 30 minutes and the tubes were subsequently washed with 2mL FACS buffer, spinned at 1500rpm × 5min, dechanted, and re-suspended in 500μL of FACS buffer.
The tubes were analyzed with FACScanto 2 BD USA and with BD FACSdiva v8.1.
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9

Cytokine Production in Immune Cells

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Neutrophils or PBMC at concentration 106/mL were stimulated with LPS, ssRNA, R848, or polyI:C overnight and the cytokine levels in the culture supernatants were determined by multiplex Luminex cytokine bead-based immunoassay (R&D Systems).
For intracellular cytokine detection, 100 uL of peripheral blood from EDTA-coated tubes was stained against lineage-specific markers (CD3, CD19, CD20, CD56) conjugated with FITC, CD16-A700, CD11c-APC, CD14-PE-DyLight594 (Exbio), HLA-DR-PerCP (BD Biosciences), and CD123-PE-Cy7 (BioLegend). After RBC were lysed with BD Lysing solution (BD Biosciences), cells were fixed and permeabilized using a FixPerm kit (Thermo Fisher Scientific). Cytokines were stained using anti IL-6-PE (clone MQ2-13A5) (Biolegend), IL-1β-PE (clone CRM56) (Thermo Fisher Scientific), and TNFα-PE (clone MAb11) (Exbio), respectively. FMO controls were used to determine the cells producing the analyzed cytokines.
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10

Monocyte Phenotyping After Lentiviral Transduction

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Monocytes transduced with LV-G242T were seeded at a concentration of 1x106 cells ml−1 in CellGro and analyzed after 1, 3 or 7 days of in vitro culture. Surface marker expression was analyzed by flow cytometry using the following monoclonal antibody conjugated with fluorochromes: CD209-FITC, CD14-PE, HLA-DR-PerCP and CD86-APC (BD Biosciences). Non-transduced monocytes were used as negative controls and conventional DCs (ConvDCs) were used as positive controls. Acquisitions and analyses were performed by LSR II and Flowjo analyses software.
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