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Superdex 200 increase column

Manufactured by Cytiva
Sourced in Sweden, Japan, Morocco

The Superdex 200 Increase column is a size exclusion chromatography column designed for the separation and purification of proteins, peptides, and other biomolecules. It is composed of a porous agarose-based resin that allows for efficient separation based on molecular size. The column is suitable for use in various liquid chromatography systems and can be used to determine the molecular weight and purity of samples.

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30 protocols using superdex 200 increase column

1

Purification and Isolation of Fab-AMH Complex

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Full-length 6E11 antibody was digested over 4 hours at 37 °C using immobilized ficin agarose resin (Thermo Fisher) and then clarified by size-exclusion chromatography using a Superdex Increase 200 column (Cytiva) to isolate fab fragments. Excess 6E11 fab was then combined with dimeric AMH procomplex in sizing buffer (10 mM MES, 150 mM NaCl, pH = 5) and incubated for 1 hour while rocking at 4 °C. The resulting complex was then concentrated and isolated using a Superdex Increase 200 column (Cytiva) before immediate use in structural applications.
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2

Molecular Weight Determination of NS1 mSPE-7 IgE

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The three peaks isolated from the S200 Increase HPLC purification of NS1 mSPE-7 IgE were run again on the Superdex™ 200 Increase column (Amersham Pharmacia Biotech) to determine their molecular weight, using an inline miniDAWN light-scattering detector and an Optilab DSP Interferometric Refractometer, and the data was analysed using the ASTRA 4.9 software (Wyatt Technology).
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3

Purification and Characterization of SPE-7 IgE Antibodies

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The recombinant mSPE-7 and chSPE-7 IgE antibodies, and mSPE-7 IgE from the NS1 hybridoma culture were isolated from cell culture supernatants using an HiTrap NHS-activated HP column (GE Healthcare) amine coupled with IgG4-Fc(sFcεRIα)2 fusion protein44 (link) and eluted with 0.2 M glycine, pH 2.5, before immediate neutralization with 1 M Tris, pH 8.6. Monomeric IgE antibodies were isolated by size-exclusion chromatography using a Superdex™ 200 column (Amersham Pharmacia Biotech) on an HPLC system (Gilson). For the designated experiments, the same purification methods (affinity chromatography and size exclusion) were used to purify the commercially available Sigma SPE-7 IgE and smaller contaminating proteins. Monomeric IgE antibodies were eluted at around 15 minutes and the contaminants were eluted after 20 minutes.
A new technology, the Superdex™ 200 Increase column (Amersham Pharmacia Biotech) was also utilized on the HPLC system (Gilson) to fractionate SPE-7 IgE produced from the NS1 hybridoma cell culture, which had first been isolated by means of the Fc(sFcεRIα)2 fusion protein, and the commercially available Sigma SPE-7 IgE.
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4

Assembling SPARSA-gRNA-tDNA Complex

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To assemble the SPARSA-gRNA-tDNA complex, the purified SPARSA sample was incubated with 42 nt 5’ phosphorylated gRNA56 (link) at a molar ratio of 1:1.2. After incubation at 4 °C for 30 min, complementary tDNA56 (link) was added at a molar ratio of 1:1.2 and incubated at 4 °C for 30 min. The resulting sample was then subjected to a Superdex 200 Increase column (Cytiva Life Sciences). The fractions were used to perform cryo-EM experiments.
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5

Purification and Solubilization of Shark Na+/K+ ATPase

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NKA was isolated from rectal glands of shark Squalus acanthias as described previously (11 (link)). The microsomal preparation was purified by sucrose flotation (27 (link)) and washing with ∼0.15% deoxycholate. The preparation was suspended in histidine/ethylenediaminetetraacetic acid (EDTA) buffer with 25% glycerol and kept at −80 °C until use. This preparation contained the α1- and β1-subunits and an equimolar amount of the FXYD10 regulatory protein (28 (link)) and showed a turnover number of 200/s at 37 °C.
For solubilized NKA, the purified membrane preparation was incubated first with 10 mM 3-morpholinopropanesulfonic acid (MOPS)–n-methyl-D-glucamine (NMDG), pH 6.5; 25% (wt/vol) glycerol; 4 mM MgCl2; and 4 mM glutathione. It was then treated with 5.2% (wt/vol) octaethyleneglycol mono-n-dodecylether (C12E8) at a weight ratio (C12E8/protein) of 3.5 and separated from the insoluble fraction by centrifugation at 200,000 × g at 10 °C. The supernatant was subjected to size-exclusion chromatography using a Superdex 200 Increase column (Cytiva) equilibrated with 1 mM MgCl2, 0.01% (wt/vol) C12E8, 1 mM dithiothreitol, and 20 mM 2-morpholinoethanesulfonic acid–NMDG, pH 6.1, or 20 mM imidazole-HCl, pH 7.5. Peak fractions were collected and concentrated to 8 mg/mL and stored in liquid nitrogen until use.
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6

Expression and Purification of Secreted Glycosidases

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NEU1 and CTSA were expressed as secreted proteins in Sf9 insect cells infected with recombinant baculovirus. For murine NEU1 (UniProt ID O35657), the endogenous 41-residue N-terminal signal peptide (SP) was replaced by the melittin SP MKFLVNVALVFMVVYISYIYA, followed by a hexahistidine tag DRHHHHHHGS. The 47-residue SP of human NEU1 (UniProt ID Q99519) and the 28-residue SP of human CTSA (UniProt ID P10619) were also replaced as above. The genes were cloned downstream of a polyhedrin promoter.
Expression was carried out at 27°C for 66 hours in I-Max medium (Wisent). Proteins were isolated from expression culture media by immobilized metal affinity chromatography with HisPur Ni-NTA resin (Thermo Fisher Scientific), washed with buffer [25 mM tris-HCl (pH 7.5), 500 mM NaCl, and 10 mM imidazole], and eluted with buffer containing 250 mM imidazole. Proteins were purified by size exclusion chromatography (SEC) on a Superdex 200 Increase column (Cytiva) in buffer [10 mM tris-HCl (pH 7.5) and 100 mM NaCl]. NEU1 was further purified by anion exchange chromatography on a Mono Q column (Cytiva) in buffer [10 mM tris-HCl (pH 7.5) and 100 to 300 mM NaCl], diluted to 100 mM NaCl, and concentrated to 10 mg/ml. CTSA was supplemented with 10 mM sodium acetate (pH 4.5) and concentrated to 20 mg/ml, as it underwent reversible aggregation at high concentration at neutral pH.
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7

Fab-Env Complex Formation and Purification

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50μg of Env was incubated with 5–8x molar excess of Fab in the case of Env trimer or at 1.3-1.4x molar excess Fab in the case of Env monomer in 500μL buffer (typically 2.5mM Tris pH 7.5, 350mM NaCl but in some instances 5mM Hepes pH 7.5, 150mM NaCl was used) and allowed to incubate on ice for 90 minutes. SEC was then run using a Superose 6 increase column (Cytiva) for complexes with trimer or a Superdex 200 increase column (Cytiva) for complexes with Env monomer in the same buffer used for incubation. Fractions with protein were run on SDS-PAGE and visualized with silver stain.
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8

Spin-Labeled BmrCD Mutant Preparation

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For electron paramagnetic resonance spectroscopy, double-Cysteine mutants generated on the C-less background of BmrCD were eluted following Ni-NTA purification and labeled with 20-fold molar excess of 1-oxyl-2,2,5,5-tetramethylpyrroline-3-methyl methanethiosulfonate (Enzo Life Sciences) at room temperature in the dark over a 4 h period, after which protein samples were placed at 4 °C overnight (roughly 15 h). The labeled protein samples in β-DDM and LMNG were then separated from free label by SEC on a Superdex 200 Increase column (Cytiva) in buffer containing 50 mM Tris-HCl, 150 mM NaCl, 10% (v/v) glycerol, pH 7.4 containing 0.05% β-DDM (β-DDM samples) or 0.01% LMNG (digitonin samples). The samples in 0.01% LMNG containing buffer were then exchanged into digitonin buffer (50 mM Tris-HCl, 200 mM NaCl, 0.06% w/v digitonin, pH 7.4). The collected fractions of spin-labeled BmrCD mutants were concentrated using an Amicon Ultra-100 kDa centrifugal filters (Millipore), and the final concentration determined by absorbance at 280 nm (mean extinction coefficient 68,077.5 M−1 cm−1).
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9

SDS-PAGE and SEC for Protein Analysis

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SDS-PAGE was performed with 4%-20% gradient gels (Bio-Rad 4561093) using a 1X Tris/Glycine/SDS buffer (Bio-Rad 1610732). Samples were heated at 95% C for 5 min in 1X Laemmli buffer (Bio-Rad 1610737) under nonreducing condition. SEC was performed on a Superdex 200 Increase column, 10 × 300 mM (Cytiva 28990944) on an Agilent 1200 HPLC system. The flow rate was 0.75 ml/min and the buffer was PBS. Mass spectrometry was performed on a Bruker Ultraflextreme MALDI TOF-TOF.
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10

Structural Characterization of SARS-CoV-2 Spike and RBD

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To characterize the purity and oligomeric state of soluble coronavirus S and RBD, purified proteins were injected onto a SRT SEC-1000 column (4.6 × 300 mm, Sepax) at 0.35 mL/min in PBS (for S) or a Superdex 200 Increase column (3.2 × 300 mm, Cytiva) at 0.15 mL/min in PBS (for RBD). The column and the entire SEC-MALS system, which includes a 1260 Infinity II HPLC (Agilent), a miniDAWN TREOS II MALS detector (Wyatt) and a Optilab T-rEX refractive index detector (Wyatt), were equilibrated in PBS for at least 24 h prior to analysis. Molecular weights of S and RBD were determined using Astra (Wyatt).
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