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22 protocols using anti cd11b pe cy7

1

Immunophenotyping of Leukocyte Subsets

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The SVF cells and splenocytes (2.5 × 105 cells/sample) were incubated with Fc-blocker (anti-CD16/CD32; eBioscience, San Diego, CA) for 20 min and then stained with combinations of anti-CD11b PE-Cy7, anti-Ly-6G PE-Cy5, and anti-F4/80 PE-Cy5, anti-CD11c PE for 20 min. Heparin-treated whole blood cells (50 μL) were stained with anti-CD11b PE-Cy7, anti-Ly-6G PE-Cy5, anti-F4/80 PE-Cy5, or anti-CD11c PE (all from eBioscience). After 20-min incubation in the dark, whole blood cells were incubated with 600 μL Versa Lyse (Beckman Coulter, Tokyo, Japan) at room temperature in the dark. The SVF cells, splenocytes, and blood cells were washed with Staining buffer (BD Pharmingen). Finally, cells were resuspended in Staining buffer and analyzed using fluorescence-activated cell sorting analysis performed with Guava® EasyCyte™ 6HT flow cytometry system (Millipore, Long Beach, CA) and InCyte software (Millipore). A validation of the flow cytometric approach for the identification of total CD11b+ Ly-6G+ neutrophils is shown in Supplementary Figure S1.
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2

Multiparametric Flow Cytometry Analysis

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Whole spleens and thymuses were disaggregated into single cell suspensions and stained for surface receptors for 30 min, followed by washing twice with buffer and flow cytometric analysis. Whole intestines were flushed twice with Hank's buffered saline solution (HBSS) and washed twice in HBSS to remove debris. Intestines were then digested with 1 mg/ml collagenase IV and 40 μg/ml DNAse I shaking for 15 min 37°C to prepare single cell suspensions, followed by washing in HBSS. Data was collected using a LSRFortessa X20 (BD Biosciences, San Jose, CA). Anti-γδTCR FITC, anti-CD44 PerCP-Cy5.5, anti-CD62L APC, anti-CD19 Alexa 700, anti-TCRβ APC-Cy7, anti-CD4 PE-610, anti-CD69 eFluor450, anti-F4/80 APC, anti-MHCII Alexa 700, and anti-CD11b PE-Cy7 were from Thermo Fisher Scientific (Carlsbad, CA). Anti-CD8 BV 605, anti-CD25 PE, and anti-Ly6G BV 421 were from Biolegend (San Diego, CA). Anti-NK1.1 FITC and anti-CD11c PE were from BD Biosciences (San Jose, CA).
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3

Multicolor Flow Cytometry Assay for Murine Immune Cells

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For surface staining, single-cell suspensions were prepared as described before. Staining was performed with Live-Dead viability-staining (propidium iodide or 7-Aminoactinomycin 7AAD (BioLegend) or fixable viability stain 450 (BD Biosciences)). For analysis of the murine cell phenotype, the following antibodies were used:
Anti-CD4-V450 (1:400) (clone: RM4-5, BD Bioscience), Anti-CD4-PeCy7 (1:1000) (clone: RM4-5, BD Bioscience), Anti-CD4-AF700 (1:200) (clone: RM4-5, BD Biosciences), Anti-CD3-APC (1:200) (clone: 1452-C11, BD Bioscience), Anti-IFNγ-V450 (1:200) (clone: XMG1.2, BD Bioscience), Anti-CD45.2- AlexaFluor 700 (1:400) (clone: 104, Thermo Fisher Scientific), Anti-CD45-BV605 (1:200) (clone: 30-F11, BD Bioscience); Anti-CD11b- Pe/Cy7 (1:200) (clone: M1/70, Thermo Fisher Scientific), Anti-CD11b-PerCP-Cy5.5 (1:200) (clone: M1/70, Biolegend), Anti-IL 17-APC (1:200) (clone: eBio17B7, Thermo Fisher Scientific), Anti-CXCR5-FITC (1:200) (clone: L138D7, BioLegend) and Anti-PD-1-PE (1:200) (clone: 29F.1A12, BioLegend), Anti-Bcl6-PECy7 (1:50) (clone: 7D1, Biolegend), Anti-IL21-APC (1:50) (clone: FFA21, Thermo Fisher Scientific).
Flow cytometry was performed with a FACS Canto II57 (link) and data were analyzed using FlowJo 10.0 software (https://www.flowjo.com/solutions/flowjo).
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4

Comprehensive Immune Cell Profiling

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Before cytokine staining, T cells underwent in vitro stimulation with PMA (40 ng/ml), Ionomycin (2 μM), Monensin (4 μM) in 1 ml RPMI 1640 (containing 10% FBS, 2 mM L-glutamine, 100 U/ml penicillin G, 0.1 mg/ml streptomycin, and 10 mM HEPES) for 4 h. Cells were resuspended in PBS supplemented with 0.5% BSA and 1 mM EDTA (FACS buffer) (splenocytes and lymphoid cells: 1 × 106/tube, all available CNS mononuclear cells from each sample/tube) and stained with the antibodies listed below at 4˚C for 30 min. The anti-mouse antibodies used for flow cytometric analysis were the following: anti–CD45–APC-Cy7, anti-CD4-APC, anti-IFNγ-BV421, anti-IL-17–PerCP Cy5.5, anti-IL-10FITC, anti-Foxp3-PE, anti-CD11b-PE-Cy7, anti-Ly6G-BV421, anti-MHC II-FITC, anti-Ly6C-PerCP Cy5.5, anti-CCR2- BV510 (all antibodies were from eBiosciences or BioLegend). After staining, the cells were analyzed with FACSVerse flow cytometer. Flow cytometric data were viewed and analyzed by FlowJo v10.
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5

Multiparametric Flow Cytometry of Immune Cells

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Cells from lymph nodes (5x105) or ear homogenates (1x106) were washed with PBS at 400 g for 5 min at 4°C and blocked with Human FcX (BioLegend) for 15 min, followed by staining with the antibody cocktail for 30 min at 4°C. Cells were then washed with a cytometry buffer (PBS with 5% FBS) at 400 g for 5 min and 4°C), then fixed with 4% formaldehyde (Sigma) for 15 min at 4°C. Cells were washed and resuspended in the cytometry buffer and stored in the dark at 4°C until acquisition. The following antibodies were used: anti-PD-L1-APC, anti-CD10-APC-780 (human, eBioscience); anti-CD45-APCcy7, anti-CD11b-FITC, anti-CD11b-PE, anti-CD11b-PEcy7, anti-Ly6G-PerCP, anti-Ly6G-FITC and anti-PD-L1-APC (murine, eBioscience). Acquisition of events (lymph node, 100,000 events; ear, all cells) was performed on a BD FACSAria™. The gate strategy was performed based on the selection of cell size (FSC) and composition (SSC). After identifying the main population, a gate of FSC-A (area) and FSC-H (weight) was used, where cellular doublets were excluded. Gates for positive events were established through Fluorescence Minus One (FMO) control. The data analyzes were performed using the FlowJo software.
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6

Multiparameter Flow Cytometry of Adipose SVF

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Stromal vascular fraction (SVF) cells were harvested from the inguinal AT, and to block Fc receptors, they were incubated with FC block (Cat # 156604, TruStain FcX PLUS, anti-mouse CD16/32, BioLegend, London, UK) for 10 minutes. For the macrophages panel, cells were stained with anti-CD86-APC-R700 (Cat # 565479, BD Biosciences, San Jose, USA), anti-F4/80-APC antibody (Cat # 123116, BioLegend), and anti-CD11b PE-Cy7 (Cat # 25-0112-81, eBioscience, San Diego, USA). For the eosinophils panels, anti-Siglec-F BV421 (Cat # 562681, BD Biosciences), anti-CD11b APC (Cat # 101212, BioLegend), anti-CD63 PE(Cat# 564222, BD Biosciences), and anti-CD193 (CCR3) Alexa 647 (Cat# 144508, BioLegend) were used. After staining, cells were washed with a washing buffer (2% FCS in PBS) and analyzed using a BD FACSLyric™ flow cytometer (BD Biosciences).
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7

Multiparameter Flow Cytometry Myeloid and Lymphocyte Panel

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Cell suspensions were Fc-Receptor blocked and stained with the following antibodies (all from Biolegend unless indicated otherwise): (Myeloid panel) anti-Ly6G-FITC (1A8; 1.25 μg/ml), anti-CD64-PE (X54-5/7.1; 2 μg/ml), anti-CD11c-PerCP-Cy5.5 (N418; 1 μg/ml), anti-CD11b-PE-Cy7 (M1/70; 0.2 μg/ml), anti-Ly6C-AlexaFluor700 (HK1.4; 2 μg/ml), anti-MHCII-APC-Cy7 (M5/114.15.2; 0.067 μg/ml), anti-TREM-1-eFluor660 (TR3MBL1 from eBioscience; 0.2 μg/ml), anti-CD45-BrilliantViolett (30-F11; 1 μg/ml). (Lymphocyte panel) anti-CD8b-FITC (53-5.8; 0.8 μg/ml), anti-TCRab-PE, anti-GL7-PerCP-Cy5.5 (GL7; 1 μg/ml), anti-CD19-PE-Cy7 (6D5; 0.5 μg/ml), anti-CD11b-PacificBlue (M1/70; 0.25 μg/ml), anti-NK1.1-AlexaFluor700 (PK136; 2.5 μg/ml), anti-CD4-APC-Cy7 (RM4-5; 0.25 μg/ml), anti-BTLA-AlexaFluor647 (6A6; 2.5 μg/ml), anti-CD45-BrilliantViolett (30-F11; 1 μg/ml). As an isotype control for the anti-TREM-1-e-Fluor660 a mouse anti rat IgG2a-eFluor660 antibody (eBR2a; 0.2 μg/ml) from eBioscience was used. Dead cells were excluded using DAPI (Invitrogen) at a final concentration of 0.5 μg/ml. All samples were acquired on a LSRII SORP (BD Biosciences, San Diego, CA) and analyzed using the FlowJo Software (Tree Star, Ashland, OR).
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8

Mouse Liver Cell Isolation and FACS

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Dissected mouse livers were minced with a scalpel on ice and incubated at 37 ˚C in RPMI-1640 media containing 0.05% collagenase/dispase (11097113001; Roche) and 0.01% trypsin inhibitor (T7659; Sigma). Cell suspension was filtered through a 70 μm cell strainer into PBS and residual red blood cells lysed using red cell lysis buffer (11814389001; Roche). Cell suspensions at a concentration of 1 × 107 cells/ml were the incubated for 45 min at 4 ˚C in the presence of anti-CD11b PE-Cy7 (25-0112-82, eBioscience), anti-Gr1 PE (12-5931-82; eBioscience), anti-CD45 PE (12-0451-82; eBioscience), anti-CXCR2-APC (149305; Biolegend), and Mouse BD Fc Block (553141, BD Bioscience). FACS analysis was performed using a FACSCalibur flow cytometer (BD Biosciences) and analyzed with FlowJo software version 7.2.5 (Tree Star, Ashland, OR).
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9

Immunophenotyping of Murine Leukocytes

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Mononuclear cells and blood leukocytes (2.5 × 105 cells) were blocked with anti‐Fc‐receptor anti‐CD16/CD32 (14‐0161; eBioscience, San Diego, CA) for 20 min and stained with combinations of anti‐CD11b PE‐Cy7 (25‐0112), anti‐F4/80 FITC (11‐4801), anti‐Ly6C PE (12‐5932), anti‐Ly6G PE‐Cy5 (15‐9668), anti‐CD3e PE Cy7 (25‐0031), and anti‐CD45 FITC (11‐0451) for 20 min. Flow cytometry was performed using an Attune® Acoustic Focusing Cytometer (Thermo Fisher Scientific) analyzer, and data analysis was performed using Attune™ NxT Software (Thermo Fisher Scientific). Flow cytometric identification of neutrophils, T cells, and macrophage subtype was validated as previously described.16 Validation of the flow cytometric approach for the identification of macrophages, neutrophils, and T cells is shown in Supporting Information Figures S1 and S2, which are available online.
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10

Neutrophil IL-22 Production in Leishmaniasis

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Neutrophils were co-cultured with amastigotes (MOI of 5) for 24 h in the presence of aprotinin (50 µg/mL) to minimize protease-mediated cytokine degradation. Cytokine levels in culture supernatants were assessed by multiplex (eBioscience) and analyzed with a Bio-Plex 200 multiplex reader equipped with Bio-Plex Manager 6.0 software (Bio-Rad Laboratories, Hercules, CA). To confirm neutrophil production of IL-22, cells were collected after 4 h of co-culture with parasites (MOI of 5), stained for anti-Ly6G-AlexaFluor 647, anti-CD11b-PE-Cy7, and anti-IL-22-PE (eBioscience), and then analyzed by flow cytometry.
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