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101 protocols using cholesterol chol

1

Synthesis and Purification of Fluorescent Lipid Probes

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1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC) > 99% was purchased from Avanti Polar Lipids (Alabaster, AL, USA), cholesterol (CHOL) from Sigma-Aldrich (Taufkirchen, DE, Germany), and DIBO Alexa Fluor 488 from Invitrogen (Waltham, MA, USA). Commercially available chemical reagents, purchased from Sigma-Aldrich (Taufkirchen, DE, Germany), Alfa Aesar (Ward Hill, MA, USA), TCI (Eschborn, Germany), and Acros Organics (Fair Lawn, NJ, USA), were used as received without further purification. All solvents were distilled before usage and dried when needed using standard procedures. The moisture-sensitive reactions were carried out under nitrogen atmosphere. Analytical thin-layer chromatography (TLC) was performed using silica gel pre-coated aluminum plates with a thickness of 0.2 mm. The compounds were visualized with a potassium permanganate stain solution (1.50 g of KMnO4, 10.0 g of K2CO3, 100 mg of NaOH, and 200 mL of H2O). Liquid column chromatography purification was performed with silica gel 60 (40–63 μm mesh) from Macherey–Nagel (Düren, DE).
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2

Preparation of Lipid Nanoparticles for siRNA Delivery

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Lipids dilinoleylmethyl-4-dimethylaminobutyrate (DLin-MC3-DMA or MC3) were obtained from Med Chem Express (Monmouth Junction, NJ, USA). 1,2-Dioleoyl-3-trimethylammonium-propane (DOTAP), 1,2-distearoyl-sn-glycero-3-phosphocholine (DSPC), 1,2-dimyristoyl-rac-glycero-3-methoxypolyethylene glycol-2000 (DMG-PEG), and 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy (poly-ethylene glycol)-2000]-maleimide (DSPE-PEG-Mal) were obtained from Avanti Polar Lipids (Alabaster, AL, USA). 1,1′-Diooctadecyl-3,3,3′,3′-teramethyl–indocarbocyanine perchlorate (DiI) as a lipophilic tracker and Hoechst 33,342 as a nucleic acid stain were obtained from Molecular Probes (Leiden, The Netherlands). Cholesterol (Chol) and N-succinimidyl S-acetylthioacetate (SATA) were purchased from Sigma (St. Louis, MO, USA). EGFP-S1 positive control DsiRNA (siRNAGFP) was purchased from Integrated DNA Technologies Inc. (Coralville, IA, USA). Other siRNA were obtained from Qiagen (Venlo, The Netherlands). LipofectamineTM 2000 was obtained from Invitrogen (Breda, The Netherlands). The hybridoma for producing E1/6-aa2 monoclonal antibody (mouse IgG1 against human VCAM-1) was kindly given by Dr. M. Gimbrone from the Harvard Medical School (Boston, MA, USA).
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3

Synthesis of PEG-Peptidyl-Lipids and Controls

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Full details for the syntheses of PEG2000-peptidyl-lipids 1-4 and two PEG2000-lipid controls 5 and 6 are described elsewhere (Yingyuad et al, 2013 (link)). The cationic lipid N’,N’-dioctadecyl-N-4,8-diaza-10-aminodecanoyl-glycylamide (DODAG) 7 was prepared as described previously (Mevel et al, 2010 ). Dioleoyl-L-α-phosphatidylcholine (DOPC) 8 and cholesterol (Chol) 9 along with all other chemicals were purchased from Sigma-Aldrich, Lancaster or Merck Biosciences. Anti-luciferase siRNA was obtained from Qiagen. Silencer negative control siRNA was purchased from Applied Biosystems/Ambion. HLE was purchase from Sigma/Aldrich (UK), MMP-2 from Calbiochem (UK). Propidium iodide and SYBR® green II RNA gel stain were obtained from Molecular Probes (UK). SYBR® safe DNA gel stain and 10x Tris-borate-EDTA (TBE) electrophoresis buffer were purchased from Invitrogen.
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4

Lipid-based Nanoparticle Formulation Protocols

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Egg Phosphatidylcholine (PC), CAS: 8002–43–5, 1,2-Dipalmitoyl-sn-glycero-3-phospho-rac-(1-glycerol) sodium salt (DPPG), CAS: 67232–81–9, 1,2-Dipalmitoyl-sn-glycero-3-phosphocholine (DPPC), CAS: 63–89–8, and Cholesterol (Chol), CAS: 57–88–5, were obtained from Sigma-Aldrich Company Ltd. (Poole, UK). 1,2-dioleoyl-sn-glycero-3-phsphoEthanolamine (DOPE), CAS: 4004–05–1, 1,2-dioleoyl-3-trimethylammonium-propane (DOTAP), CAS: 144189–73–1, dimethyldioctadecylammonium bromide (DDA), CAS: 3700–67–2, and trehalose 6,6-dibehenate (TDB), CAS: 66758–35–8 were purchased from Avanti Polar Lipids, Inc., (Alabaster, AL), purity >99% (Table I). Ethanol, CAS: 64–17–5, and mEthanol, CAS: 67–56–1, were obtained from Fisher Scientific (Loughborough, UK). TRIS Ultra Pure, CAS: 77–86–1, was obtained from ICN Biomedicals, Inc., (Aurora, Ohio, US). Propofol (2,6-Bis(isopropyl)phenol), CAS: 2078–54–8, and ovalbumin (chicken egg), CAS: 9006–59–1, were obtained from Sigma-Aldrich Company Ltd., (Poole, UK). Ultrafiltration regenerated cellulose membranes (p\n: U2755–10AE) were obtained from Sigma-Aldrich Company Ltd., (Poole, UK) (10 kDa, pore size 0.22 µm), and Biomax polyethersulfone ultrafiltration membrane discs with 300 kDa cutoff, pore size 0.45 µm (p\n: PBMK06210) from Merck Milipore (Darmstadt, Germany).
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5

Preparation of Fluorescent Liposomes for Biological Studies

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The source of reagents were: dimyristoylphosphatidylcholine (DMPC) and dioleoyl-trimethylammonium-propane (DOTAP): Avanti Polar Lipids (Alabaster, AL); DiIC18(7) dialkyl carbocyanine membrane label (DiR): Invitrogen (Carlsbad, CA); cholesterol (Chol): Sigma-Aldrich (St. Louis, MO).
The liposomes were prepared by hydration of a dried lipid film followed by extrusion to produce a uniform size distribution. Briefly, DMPC:DOTAP:Chol:DiIC18(7) in molar ratios of 2.75:2.75:4.5:1.1 were mixed in chloroform and dried under vacuum. The resulting lipid film was hydrated to a concentration of 20 mM in NaCl/Tris (150mM NaCl, 25mM TRIS, pH 7.0) with vigorous vortexing. After 5 freeze-thaw cycles, the preparation was extruded stepwise through polycarbonate filters of decreasing pore size to a final diameter of 80 nm. The final phospholipid concentration was quantified by phosphorous assay [20 (link)], and the preparation was diluted in NaCl/Tris to a concentration of 10 μmoles of diacyl lipid (DOTAP+DMPC) per ml. Prior to injection, 0.6 ml of the liposomes were diluted in NaCl/Tris buffer to a volume of 1 ml.
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6

Siglec-7 Targeted Liposomal Delivery

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The liposomes were prepared as described (25 (link)). Briefly, 4 mol% Siglec-7 targeted liposomes were composed of distearoyl phosphatidylcholine (DSPC, Avanti Polar Lipids): cholesterol (Chol, Sigma-Aldrich): polyethyleneglycol-distearoyl phosphoethanolamine (PEG-DSPE, NOF): Siglec-7 ligand-lipid (35 (link)) in a 58: 37: 1: 4 molar ratio. Naked liposomes were composed of 5mol% PEG-DSPE instead of the Siglec-7 ligand-lipid. Antigenic liposomes substituted 1 mol% DSPC for 1 mol% C80 GMM. Fluorescent liposomes contained 0.2 mol% of Alexa fluor 647-PEG-DSPE (28 (link)). For liposome preparation, lipid components in dimethyl sulfoxide (Siglec-7 ligand-lipid, C80 GMM, and Alexa 647-PEG-DSPE) were mixed and lyophilized in a glass tube. The other components in chloroform were then added to the tube and dried completely by air flow. The dried lipids were hydrated with 1 mL of PBS, sonicated, then extruded by an liposome extruder (Avanti Polar Lipids) until the size became around 100 nm measured by Zetasizer (Malvern). The GMM concentration in the antigenic liposomes was 10 μM.
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7

Formulation and Characterization of Lipid Nanoparticles

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Cholesterol (Chol) was obtained from Sigma (St. Louis MO, USA). 1-methyl-4-(cis-9-dioleyl) methyl-pyridinium-chloride (SAINT-C18) was obtained from Synvolux Therapeutics Inc. (Groningen, The Netherlands). 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), 2-distearoyl-sn-glycero-3-phosphoethanolamine-N- [methoxy(polyethyleneglycol)-2000] (DSPE-PEG2000) and 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-N-[methoxy(polyethyleneglycol)-2000]-maleimide (Mal-PEG2000 -DSPE) were obtained from Avanti Polar Lipids (Alabaster, AL, USA).
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8

Liposome Preparation and Composition

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Large unilamellar vesicles (LUVs), with a diameter of approximately 100 nm, were obtained by extrusion of multilamellar vesicles (MLVs) as described elsewhere [41 (link)]. 1-Palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (POPC), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoethanolamine (POPE), 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphoinositol (POPI), and 1-palmitoyl-2-oleoyl-sn-glycero-3-phospho-L-serine (POPS) were from Avanti Polar Lipids (Alabaster, AL, USA), while cholesterol (Chol) and ergosterol (Erg) were from Sigma. The LUVs studied were mostly zwitterionic (pure POPC, POPC:Chol 70:30, POPC:Erg 70:30, and C. albicans membrane-like mixture, i.e., POPC:POPE:POPS:POPI:Erg 59:21:3:4:13 [42 (link)]), mimicking membrane systems relevant for the study [32 (link),41 (link)]. Liposomes were extruded in the day of the measurement. HEPES buffer was used in all the measurements, except when otherwise indicated.
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9

Liposome Formulation for Drug Delivery

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1,2-Distearoyl-sn-glycerol-3-phosphatidyl-choline [DSPC], and 1,2-Distearoyl-sn-glycerol-3-phosphatidyl-ethanolamine-N-[methoxy(polyethylene-glycol)-2000] [PEG2000] were purchased from Lipoid, Germany. Cholesterol (Chol) was purchased from Sigma-Aldrich (Darmstadt, Germany). The rac-2,3-dipalmitoyl-oxypropylarsonic acid [ARS] (C16), was synthesized as described in detail before [1 (link),24 (link),25 (link)]; TREG lipid was also synthesized using the method reported in detail before [18 (link),19 (link)]. Doxorubicin, hydrochloric salt (DOX) was purchased by Tocris Bioscience, UK. Fetal Calf Serum (FCS) was from Sigma (Darmstadt, Germany).
A bath sonicator (Branson) and a microtip-probe sonicator (Sonics and Materials, Leicestershire, UK) were used for liposome preparation. Protein concentrations were measured by Bradford microassay (1–10 µg protein/mL). The Cell Viability MTT assay was carried out with 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) reagent, which was purchased by Sigma-Aldrich. All other reagents and chemicals used were of analytical grade, and were purchased from Sigma-Aldrich. The osmolarity of solutions used for liposome formation was measured by a Roebling osmometer and adjusted to 300 mOsm with NaCl (if needed).
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10

PC Lipid Characterization and Membrane Thermodynamics

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All phosphocholine (PC) lipids (Avanti Polar Lipids, Alabaster, AL), Texas Red dihexadecanoyl-PE (DHPE; Life Technologies, Grand Island, NY), and cholesterol (chol; Sigma, St. Louis, MO) were purchased and used without further purification. The PC-lipids and their single-component membrane Tmelt values are as follows: dilauroyl-PC (12:0-PC, −2 °C), ditridecanoyl-PC (13:0-PC, 14 °C), dimyristoyl-PC (14:0-PC, 24°C), dipalmitoyl-PC (16:0-PC, 41 °C), diheptadecanoyl-PC (17:0-PC, 50 °C), distearoyl-PC (18:0-PC, 55 °C), dioleoyl-PC (18:1-PC, −17 °C), dieicosenoyl-PC (20:1-PC, −4 °C), dierucoyl-PC (22:1-PC, 13 °C), dinervonoyl-PC (24:1-PC, 27 °C), and diphytanoyl-PC (4Me-16:0-PC, < −120 °C).72 (link)–74 Structures of the lipids are given in Figure S1.
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