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Blue dextran

Manufactured by Merck Group
Sourced in United States, Germany, United Kingdom

Blue dextran is a high molecular weight polysaccharide compound used as a molecular weight marker and tracer in various laboratory applications. It serves as a tool for monitoring and analyzing the separation of molecules, particularly in gel filtration and chromatography procedures. Blue dextran's distinctive blue color makes it easily detectable, allowing researchers to track its progress during experiments.

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82 protocols using blue dextran

1

Gel-filtration of Bacterial Cytosol

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Bacterial cytosol samples were fractioned by gel-filtration on a Sephacryl S-200 column equilibrated with 20 mM Tris-HCl, 100 mM NaCl buffer, pH 7.6. Detection of the biological material was carried out by spectrophotometry at 280 nm. The void volume of the column was estimated using blue dextran (Sigma). The fractions (~1.5 mL) were collected; GST activity and silver concentration were measured in each fraction. The column was calibrated with blue dextran, electrophoretically pure human ceruloplasmin, 132 kDa (A610/280 = 0.054), isolated by two-stage chromatography [36 (link)], BSA, 70 kDa (Sigma), and horse cytochrome C, 13 kDa (Serva).
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2

Protein Molecular Weight Estimation via SEC

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Size-exclusion chromatography analysis was performed on the AKTA basic system (GE Healthcare). Superdex-200 10/300 GL (GE life science, USA) was pre-equilibrated with the working buffer (20 mM Tris-HCl, 0.1 mM TCEP, and 200 mM NaCl, pH 8.0). The injected protein sample of 200 μl was run through the column at a flow rate of 0.5 ml/min. Blue Dextran (Sigma-Aldrich, D4772) was used to determine void volume. The standard mix used was composed of eight proteins: aprotinin from bovine lung (Sigma-Aldrich, A3886), cytochrome C from equine heart (Sigma-Aldrich, C7150), carbonic anhydrase from bovine erythrocytes (Sigma-Aldrich, C7025), ovalbumin from chicken egg white (Sigma-Aldrich, A8531), alcohol dehydrogenase from yeast (Sigma-Aldrich, A8656), β-amylase from sweet potato (Sigma-Aldrich, A8781), and apoferritin from horse spleen (Sigma-Aldrich, A3630).
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3

NiV G-EphrinB2 Binding Kinetics

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EphrinB2 protein was mixed with 10 μg of NiV G ectodomain in 100 μl of 50 mM tris (pH 7.5) and 150 mM NaCl at the indicated molar ratio. Samples were injected at 100-μl injection volumes and run at 0.2 ml/min on a S200 5/150 GL column with 3-ml bed volume. Sizing standards were blue dextran (2000 kDa, void volume), thyroglobulin (664 kDa), apoferritin (443 kDa), β-amylase (200 kDa), and BSA (66 kDa) (Sigma-Aldrich).
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4

Xanthine Oxidase Activity Assay

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Xanthine sodium salt, xanthine oxidase enzyme, cytochrome C from horse heart, nitroblue tetrazolium (NBT), dimethyl sulfoxide (DMSO), phenyl methosulfate (PMS), phenymethylsulfonyl fluoride (PMSF), 1,4 dithiothreitol (DTT), 1,10 phenanthroline, trypan blue dye, bovine serum albumin (BSA), blue dextran, crystal violet, Sephacryl S-300, DEAE cellulose, and kits of gel filtration molecular weight marker were product of Sigma Co. SDS molecular weight marker proteins were purchased from Pharmacia Co., DMEM, fetal bovine serum, HEPES buffer solution, RPMI-1640, gentamycin, and L-glutamine are purchased from Lonza, Belgium.
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5

Determining Dextran Molecular Weight

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The molecular weight of dextran was calculated using a PerkinElmer
Series 200 HPLC system, TSKgel G5000PWxl column (30.0 cm × 7.8
mm) and Series 200 RI detector. Dextran (1 mg/mL) was loaded on the
column and diluted using water with a constant flow rate (0.3 mL/min).
Different standards such as Blue dextran (2 000 000
Da; Sigma, USA) and Industrial dextrans (1 400 000;
788 000; 410 000; 112 000; 365 000 Da;
Sigma, USA) were used for the estimation of the molecular weight of
dextran produced by L. mesenteroides SF3.12 (link)
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6

Serum Vitamin B12 Characterization

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Pool of shrew serum from two animals (1 and 2) as: 3 × 150 μl animal 1 + 2 mixed, 3 × 150 μl animal 1 only, 3 × 150 μl animal 2 only were assayed as previously described (Gimsing and Nexø, 1989 (link)). Briefly, total B12 was measured using serum diluted 1:5 with 0.9% NaCl on the automatic platform Advia Centaur CP Immunoassay system. Unsaturated B12 binding capacity was measured on serum diluted 1:10 employing coated charcoal to separate free and bound 57Co-B12 (KemEnTec) to separate TC and HC. A sample saturated with 57Co-B12 was run on a Superdex® 200 HR 10/30 column (GE Healthcare Europe) using a Dionex® ICS-3000 chromatograph (Dionex Corporation), eluted at a flow rate of 400 μL/min for approx. 70 min employing a Tris buffer (0.1 mol/L) (Sigma Aldrich), 1 mol/L NaCl (Merck), 0.5 g/L bovine albumin (Sigma Aldrich), 0.2 g/L sodium-azide (Merck), pH 8.0. The eluted fractions were counted in a Wizard Automatic Gamma Counter to monitor the elution of 57Co-B12. Molecular mass markers Blue Dextran (Sigma Aldrich) and 22Na (GE Healthcare Europe) were used for determination of void volume (Vo), and total volume (Vt).
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7

Agarose Gel Electrophoresis Procedure

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Agarose was purchased from Lonza (USA), Promega (USA) and Biowest (Spain), respectively. Blue Dextran (2000 kDa), thyroglobulin (660 kDa), BSA (66.12 kDa), RNA (13.7 kDa), and fluorescein isothiocyanate (FITC) were from Sigma (USA). rHBSAg were kindly provided by National Engineering Research Center for Biotechnology (China). QZT 4FF was kindly provided by Senhui Microspheres Tech (Suzhou) (Suzhou, Jiangsu, China). All other chemicals were of analytical grade and all solutions were made using Milli Q‐grade water (Millipore, USA).
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8

Purification of LOS Vesicles Using SEC

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100 µM ΔlgtE LOS vesicles were incubated in 150 µL reaction buffer (20 mM HEPES pH 7.5, 1 mM MnCl2, 1 µM LgtE, 1 mM UDP-galactose), at 30 °C for a minimum of 2 h. The vesicle containing solution was applied to a column (length 5.5 cm, diameter 1.5 cm) containing Sepharose 2B (GE Health Sciences) for size exclusion chromatography. The samples were run with Blue Dextran (Sigma) as a void volume marker. Fractions (1 mL) were collected. Intact vesicles eluted primarily is fractions 2 and 3. To confirm the presence of the vesicles, 15 µ of each fraction was mixed with 5 µl 3x Laemmli buffer and then subjected to SDS-PAGE analysis. The fractions were run on a 16% Criterion™ Tris-Tricine Precast gel (Bio-Rad Laboratories Inc.). The gel was run at a constant current of 3 mAmp, on ice, for approximately 8 h. The gel was then fixed and silver-stained as described above.
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9

Purified FANCJ Protein Characterization

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Purified recombinant FANCJ protein was applied to a Superdex-200 size exclusion column (GE Healthcare) using an AKTA FPLC (GE Healthcare) as described previously (8 (link)). Proteins were detected by a UV detector. The column was calibrated using standard molecular mass markers containing blue dextran (2000 kDa), thyroglobulin (670 kDa), alcohol dehydrogenase (150 kDa), albumin (66 kDa), carbonic anhydrase (29 kDa), and aprotinin (6.5 kDa) (Sigma).
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10

SDS-PAGE Protein Analysis Protocol

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2-Amino-2-(hydroxymethyl)-1,3-propanediol (Tris), Tris hydrochloric acid (HCl), sodium chloride (NaCl), sodium hydroxide (NaOH), disodium ethylenediaminetetraacetate (Na2EDTA), acrylamide solution, urea, boric acid, N,N,N′,N′-tetramethylethylenediamine (TEMED), ammonium persulfate (APS), dimethyl sulfoxide (DMSO), methanol (MeOH), and normal melting point agarose were obtained from Roth (Karlsruhe, Germany). Acetylated bovine serum albumin (BSA), phenylmethanesulfonyl fluoride (PMSF), aprotinin, leupeptin, pepstatin, sodium fluoride (NaF), sodium orthovanadate (Na3VO4), dithiothreitol (DTT), APC, bicinchoninic acid (BCA) solution, formamide, blue dextran, Triton X-100, low melting point agarose, 1,4-Diazabicyclo[2.2.2]octane, potassium chloride (KCl), and potassium phosphate (KH2PO4) were obtained from Sigma/Merck (Darmstadt, Germany).
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