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F0313

Manufactured by Agilent Technologies
Sourced in United States

The F0313 is a laboratory instrument designed for general analytical and measurement purposes. It is a compact and versatile device that can be used for a variety of applications. The core function of the F0313 is to provide accurate and reliable data analysis and measurement capabilities to support various laboratory workflows.

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8 protocols using f0313

1

Myofibroblast Characterization by Flow Cytometry

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HLMFs were grown on T25 flasks and serum starved for 24 h prior to the experiment. The HLMFs were either left unstimulated or stimulated for 24 h with TGFβ1 (10 ng/ml), in the presence of 0.1% DMSO control, TRAM-34 (200 nM) or ICA-17043 (100 nM). The cells were detached using 0.1% trypsin/0.1% EDTA, washed then fixed and permeabilized in 4% paraformaldehyde plus 0.1% saponin (Sigma-Aldrich, St. Louis, MO, USA), respectively, for 20 min on ice. Myofibroblasts were labelled with FITC-conjugated mouse monoclonal anti-αSMA (Sigma-Aldrich, St. Louis, MO, USA), indirectly labelled with FITC and isotype control FITC-conjugated mouse IgG2a. Secondary antibodies labelled with FITC (F0313, Dako, Glostrup, Denmark) were applied. Analysis was performed using single colour flow cytometry on a FACScan (BD, Oxford, UK).
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2

Cell Cycle Analysis by BrdU and DNA Staining

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Cells were seeded in a T25 flask and when 50% confluence was reached, treated for 24 h with Adavosertib. Before harvest, cells were pulsed with 4nmol/L 5-bromo-20-deoxyurdine (BrdU, Sigma-Aldrich, 19–160) for 15 min, then harvested and fixed in 75% ice-cold EtOH overnight. Next, cells were incubated with 0.5 mg/mL RNAse A, permeabilized with 5 mol/L HCl:0.5% Triton X-100 for 20 min and HCl neutralized with 0.1 mol/L Na2B4O7. BrdU was stained overnight at 4 °C with mouse-anti-BrdU antibody (clone BU20a, M0744, Dako), and fluorescein isothiocyanate (FITC)-labeled with a conjugated rabbit anti-mouse antibody (F0313, Dako). DNA content was stained with propidiumiodide (PI) (5 µg PI per 106 cells, Sigma-Aldrich, P4170).
For VU-preSCC-M3, the Click-iT™ EdU Alexa Fluor™ 488 Flow Cytometry Assay Kit (ThermoFisher Scientific, C10420) was used according to the protocol of the manufacturer, and DNA was stained with 4′,6-diamidino-2-phenylindole (DAPI).
BD LSR II FortessaTM and BD FACSDivaTM software V8.0.1 (BD Biosciences) were used for flow cytometry and data analysis.
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3

TGFβ1-Induced Smad2/3 Translocation

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HLMFs were grown on 8-well chamber slides and serum-starved for 24 hours prior to the experiment. The cells were then stimulated with TGFβ1 (10 ng/ml) in the presence of either 0.1% DMSO control, TRAM-34 (200 nM), ICA-17043 (100 nM) or Ca2+ free media. After 1 hour cells were immunostained using rabbit monoclonal anti-Smad2/3 (0.174 μg/ml, Cell Signalling). Secondary antibody labelled with FITC (F0313, Dako) was applied and the cells counterstained with DAPI (Sigma-Aldrich). Cells were mounted with fluorescent mounting medium and cover-slipped. Images were analysed as above. The intensity of nuclear Smad2/3 staining was quantified by measuring the grey scale intensity of DAPI positive nuclei to whole cell staining.
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4

Quantification of Smad2/3 Nuclear Translocation

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HLMFs were grown on 8-well chamber slides and serum-starved for 24 h prior to the experiment. The cells were then stimulated with TGFβ1 (10 ng/ml) in the presence of either 0.1% DMSO control, TRAM-34 (200 nM), ICA-17043 (100 nM), TRAM-85 (200nM) or Ca2+-free media. After 1 h, the cells were fixed with methanol for 20 min on ice, blocked using 3% BSA for 1 h and immunostained using rabbit monoclonal anti-Smad2/Smad3 (0.174 μg/ml, Cell Signalling). Secondary antibody labelled with FITC (F0313, Dako) was applied, and the cells counterstained with 4′,6-diamidino-2-phenylindole (DAPI, Sigma-Aldrich, St. Louis, MO, USA). The cells were mounted with fluorescent mounting medium and cover-slipped.
Original images were captured on an epifluorescent microscope (Olympus BX50, Olympus UK Ltd., Southend-on-sea, Essex, UK); grey scale intensity was examined using Cell F imaging software (Olympus UK Ltd., Essex, UK). Matched exposures were used for isotype controls. The intensity of nuclear Smad2/3 staining was quantified by measuring the grey scale intensity of DAPI positive nuclei with a minimum of 10 random cells measured in one field for each condition.
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5

Smad2/3 Nuclear Translocation in HLMFs

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HLMFs were grown on 8-well chamber slides and serum-starved for 24 h prior to the experiment. The cells were either unstimulated or stimulated with TGFβ1 (10 ng/ml) in the presence of serum-free medium alone, 0.1% ethanol control, LXA4 10−10 M or LXA4 10−8 M. After 1 h cells were immunostained using rabbit monoclonal anti-Smad2/3 (0.174 μg/ml, Cell Signalling). Secondary antibody labelled with FITC (F0313, Dako) was applied and the cells counterstained with DAPI (Sigma). Cells were mounted with fluorescent mounting medium and cover-slipped. Images were analysed as above. The intensity of nuclear Smad2/3 staining was quantified by measuring the grey scale intensity of DAPI positive nuclei to whole cell staining.
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6

Immunohistochemical Staining of Macrophage Markers

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The following antibodies were used; rabbit anti-EMR1 (NBP231090, Novus, Littleton, CO, USA), mouse anti-CD206 monoclonal antibody (mAb; MAB25341, Novus), mouse anti-CD86 mAb (NBP2-25208, Novus), anti-carcinoembryonic antigen (CEA) mAb (mouse IgG1, clone II-7, Dako, Glostrup, Denmark), and FITC-conjugated anti-epithelial cell adhesion molecule (EpCAM) mAb (mouse IgG1, clone BerEP4, Dako) were used as primary antibodies. Mouse IgG, ready to use (Dako), rabbit IgG ready to use (Dako) and FITC-conjugated mouse IgG (F0313, Dako) were used as negative controls. ImmPRESS micropolymer HRP conjugated anti-rabbit IgG (MP-7401, Vector laboratories, Burlingame, CA, USA), ImmPRESS micropolymer HRP conjugated anti-mouse IgG (MP-7402, Vector laboratories), Alexa Fluor 594-conjugated goat anti-mouse IgG (ab150116, Abcam, Cambridge, MA, USA) and Alexa Fluor 555-conjugated goat anti-rabbit IgG (ab150078, Abcam) were used as secondary antibodies. The peroxidase substrate used was 3,3 -diaminobenzidine (DAB; Vector Laboratories).
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7

Myofibroblast Phenotyping by Flow Cytometry

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Cells were grown on T25 flasks and serum-starved for 24 hours prior to the experiment. The myofibroblasts were incubated for 24 hours in the presence of 0.1% DMSO control, TRAM-34 (200 nM) or ICA-17043 (100 nM). Cells were detached using 0.1% trypsin/0.1% EDTA, washed then fixed and permeabilised in 4% paraformaldehyde plus 0.1% saponin (Sigma) respectively for 20 minutes on ice. Myofibroblasts were labelled with FITC-conjugated mouse monoclonal anti-α-smooth muscle actin (sigma) or isotype control FITC-conjugated mouse IgG2a. Secondary antibodies labelled with FITC (F0313, Dako) were applied. Analysis was performed using single colour flow cytometry on a FACScan (BD, UK).
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8

Immunohistochemical Analysis of GPR35, CEA, and EPCAM

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Anti-human GPR35 (rabbit IgG; ab188949, Abcam, Cambridge, UK); anti-CEA (mouse IgG1; Dako, Glostrup, Denmark); anti-mouse Ig ImmPress and anti-rabbit Ig ImmPress reagent kits (Vector Laboratories, Burlingame, CA, USA); mouse and rabbit IgG (Dako); 3,3#-diaminobenzidine (DAB; Vector Laboratories); fluorescein isothiocyanate (FITC)-conjugated anti-epithelial cell adhesion molecule (anti-EPCAM) mAb BerEP4 (F0860; Dako); Alexa Fluor 488-conjugated rabbit anti-Phospho-SRC (Tyr419) (44-660A1, Invitrogen, Carlsbad, CA, USA); Alexa Fluor 555-conjugated goat anti-rabbit IgG (ab150078, Abcam); Alexa Fluor 488-conjugated goat anti-rabbit IgG (A11008, Invitrogen) and FITC-conjugated antimouse (F0313; Dako).
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